1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCCAGTAGGGGGGCAGGGCAGGCAAGAGTGTTTGCGCGAGCGGAAGCGAGGAAAGAGACCCCCACCCACACACCCATGCACATTGAGTCATTGACAATAGgtactgttgcaagctaagtttcattgattgggaggccgacgactgaaaggtgaaagctgcctctgccacctctgccctctcatgtctgaaaactacacttaacctactatgatttgaattgttaggccatcatgctaagatccgctaaaactaacagaacagcatgttctttgatggtctctggacag
species | Zea mays |
transcript | GRMZM2G145579_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAAAGAGACCCCCACCCACACACCCATGCACATTGAGTCATTGACAATAG GAGGAAATGATGCTGCAAGATTTGGCTAGTAGGAGCGCCAGATGAGTTTCAEST: gi|16925390|gb|BM078458.1|BM078458
genomic: GAAAGAGACCCCCACCCACACACCCATGCACATTGAGTCATTGACAATAGgtactgttgc ... ctctggacagGAGGAAATGATGCTGCAAGATTTGGCTAGTAGGAGCGCCAGATGAGTTTCA
EST: GAAAGAGACCCCCACCCACACACCCATGCACATTGAGTCATTGACAATAG GAGGAAATGATGCTGCAAGATTTGGCTAGTAGGAGCGCCAGATGAGTTTCAEST: gi|94479145|gb|EB708103.1|EB708103
genomic: GAAAGAGACCCCCACCCACACACCCATGCACATTGAGTCATTGACAATAGgtactgttgc ... ctctggacagGAGGAAATGATGCTGCAAGATTTGGCTAGTAGGAGCGCCAGATGAGTTTCA
EST: GAAAGAGACCCCCACCCCCACACCCATGCACATTGAGTCATTGACAATAG GAGGAAATGATGCTGCAAGATTTGGCTAGTAGGAGCGCCAGATGAGTTTCA
genomic: GAAAGAGACCCCCACCCACACACCCATGCACATTGAGTCATTGACAATAGgtactgttgc ... ctctggacagGAGGAAATGATGCTGCAAGATTTGGCTAGTAGGAGCGCCAGATGAGTTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAGTAGGGGGGCAGGGCAGGCAAGAGTGTTTGCGCGAGCGGAAGCGAGGAAAGAGACCCCCACCCACACACCCATGCACATTGAGTCATTGACAATAGgtactgttgcaagctaagtttcattgattgggaggccgacgactgaaaggtgaaagctgcctctgccacctctgccctctcatgtctgaaaactacacttaacctactatgatttgaattgttaggccatcatgctaagatccgctaaaactaacagaacagcatgttctttgatggtctctggacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA