ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

CTGGAATTCTATGACAAGGGTGTTGCGCCTCGTAAAAACCTTGATGTGATGAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatatgctagttctatctcttagaaatgcaaactgttttaattttaattgcttatagaggacaatgcattacacgttgcatttgtggttgagtaatatttccctgttcttcaacttgtgcag

Basic information

species	Zea mays
transcript	GRMZM2G144995_T01
intron #	7
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G144995_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g22880.1 (Oryza sativa), 5'ss of exon 7

CTGGAATTCTATGACAAGGGTGTTGCGCCTCGTAAAAACCTTGATGTGATGAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatatgctagttctatctcttagaaatgcaaac--tgttttaattttaattgcttatagaggacaatgcattacacgttgcatttgtggttgagtaatatttccctgttcttcaacttgtgcag
 | || |||||||||||||||||||| ||||||||||||||||||||||||||||| || || ||||||||||| ||||   || |||  |||| ||||||||||  |  ||||  |     |   |||||||| |||  ||   ||  | | | |     |     ||  ||||||   |                                                
TTAGACTTCTATGACAAGGGTGTTGCACCTCGTAAAAACCTTGATGTGATGAAAGCTGCGATAGACAGCATGGTTAATGATGCCACAAATGATGTTGATGgtaag--ttggctaacttcggttgccagaaatgctaacattgagctacatgttactatcatttataaactgtgcattgtgcag----------------------------------------------

upper sequence: GRMZM2G144995_T03 (Zea mays), 5'ss of exon 1
lower sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 7

------------------CTGGAATTCTATGACAAGGGTGTTGCGCCTCGTAAAAACCTTGATGTGATGAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatatgctagttctatctcttagaaatgcaaactgttttaattttaattgcttatagaggacaatgcattacacgttgcatttgtggttgagtaatatttccctgttcttcaacttgtgcag
                  || ||||| |||||||||||  |||| ||||| |||||| ||||||| |||||||| || ||||| |  |   ||||    ||     ||    || ||    |  | ||  ||||  ||| | | |           | ||| |||  |   |||| |   |  |  ||     | || |    ||||| || | |                              
GAACAAGTTGAGGAGCGACTCGAATTTTATGACAAGGGAATTGCACCTCGGAAAAACATTGATGTTATGAAAGCTGCCATTGAAATTAC--TCAA---AACAATGgtgagctat-atatggaaaagatcatagtgatatttttaa-----------tatttcaatacttgatgctgaactatcagtatttccaaaacatctattttgttgtgggggg----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|67014948|gb|CO443697.1|CO443697

EST:     GAAAGCCGCTATTGACAGCATGGTCAATAGCACCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCCAAGAANAAGCA-GAAAAAGAAGACC
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAAGAA-AAGCAAGAAAAAGAAGACC

EST: gi|45847107|gb|CN071050.1|CN071050

EST:     GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATG                         ATATCGAGAAG-CNCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACC
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGAC-CGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACC

EST: gi|31406045|gb|CD484777.1|CD484777

EST:     GAAAGCCGCTATTGACAGCATGGTCAATGGCGCCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA

EST: gi|19822271|gb|BQ048295.1|BQ048295

EST:     GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATC
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATC

EST: gi|32937890|gb|CF042709.1|CF042709

EST:     GAAAGCCGCTATTGACAGCATGGCCAATGGCCCCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA

EST: gi|6501106|gb|AW202479.1|AW202479

EST:     GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA

EST: gi|166494195|gb|EG106577.1|EG106577

EST:     GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCCAA
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAA

EST: gi|166452489|gb|EG237123.1|EG237123

EST:     ATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACC
genomic: ATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACC

EST: gi|4776651|gb|AI665654.1|AI665654

EST:     GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA

EST: gi|31911265|gb|CD651838.1|CD651838

EST:     AAAGCCGCTATTGACAGCATGGTGCAATGGCACCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCCA
genomic: AAAGCCGCTATTGACAGCATGGT-CAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCA

EST: gi|31440888|gb|CD510319.1|CD510319

EST:     GAAAGCCGCTATTGACAGCATGGTCAATGGCGCCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAG
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAG

EST: gi|22546099|gb|BU098420.1|BU098420

EST:     GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCCAAGAAAAAGCAAGAAAAAGAAGACC
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAAGAAAA-GCAAGAAAAAGAAGACC

EST: gi|61119525|gb|DN560486.1|DN560486

EST:     GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA

EST: gi|22542401|gb|BU092839.1|BU092839

EST:     GAAAGCCGCTATTGACAGCATGGTCAATGGCCCCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA

EST: gi|166455165|gb|EG273175.1|EG273175

EST:     GCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAG
genomic: GCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAG

EST: gi|22542271|gb|BU092709.1|BU092709

EST:     GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCC
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCC

EST: gi|29543471|gb|CB605557.1|CB605557

EST:     GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA

EST: gi|14717533|gb|BI245183.1|BI245183

EST:     GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATAAATAATGATG                         ATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA

EST: gi|166684194|gb|EG193229.1|EG193229

EST:     AGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAA
genomic: AGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAA

EST: gi|113737389|gb|DW858990.1|DW858990

EST:     GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATG                         ATATCGAGAAGACCGA
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGA

EST: gi|22521189|gb|BU080000.1|BU080000

EST:     GAAAGCCGCTATTGACAGCATGGTCAATGGCCCCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCC
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA

EST: gi|30306737|gb|CD001410.1|CD001410

EST:     GAAAGCCGCTATTGACAGCATGGTCAATGGCCCCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA

EST: gi|32936238|gb|CF041050.1|CF041050

EST:     GAAAGCCAAAAATGACAGCATGGCCAATGGCACCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCC
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCC

EST: gi|22546098|gb|BU098419.1|BU098419

EST:     GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATG                         ATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA
genomic: GAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 490

CTGGAATTCTATGACAAGGGTGTTGCGCCTCGTAAAAACCTTGATGTGATGAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatat ... acttgtgcagATATCGAGAAGACCGATGCATCTCCCAAGAAAAGCAAGAAAAAGAAGACCAAAACCAAGGCTGATGGTGATGCAATGGACGTGGATAAACCCTCCAACGT

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 152

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 231