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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATCTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaggttcctgtttgagataatgggataatgaaaagtgaatcatgcattgcttaattagaaactgggtattctgtttttcctctgtcag

Basic information

species Zea mays
transcript GRMZM2G144254_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G144254_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g31874.2 (Oryza sativa), 5'ss of exon 10
GTTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATCTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaggttcctgtttg-agataatgggataatgaaaagtgaatcatgcattgcttaattagaaactgggtattctgtttttcctctgtcag
  ||||  | |||||||||||||||||||||||||||||||| |||||||||||||| || ||||| || ||||||||||| ||||||||||||||||||||  ||| ||||||| | ||| |    |||  |  ||  |||| ||  ||||| | | | |||||  |  || ||  || |||   | ||
CCTGTCTCTTTTTGATGCAATACTGATTGTTCCAATGTTTCAGATTGCTTGGACCTTTTTTTCTATTTGCACAGGATTTGTGTACTTTCAAGAATATCAAgtgagtttctgtttgtaaatattatcgtaagcatgag--aatcttgtgttgctca-tgataaactaagggttttggattgccttcattag

upper sequence: GRMZM2G144254_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA02G07510.2 (Glycine max), 5'ss of exon 11
GTTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATCTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaggttcctgtttgagataatgggataatgaaaagtgaatcatgcattg---cttaattagaaactgggtattctgtttttcctctgtcag---------
  ||||||| ||||||||||| || |||||||| |||||||| || || ||||| || ||||| || |||||||||||| | || |||||||||||||| |||  ||||| ||| |  | ||      | | |   |    | | ||| |   ||  |  |  |  |    ||  | ||         | |          
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTATATATTTTCAAGAATATCAGgtac-ttcctctttaacttgatacacacaggtagcctttgcctttcatgggcactctaagaagatttaatcatattattgaagaaaactaattaaatatca

upper sequence: GRMZM2G144254_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA16G26550.1 (Glycine max), 5'ss of exon 11
GTTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATCTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaggttcctgtttgagataatgggataatgaaaagtgaatcatgcattgcttaattagaaactgggtattctgtttttcctctgtcag------------
  ||||||| ||||||||||| || |||||||| |||||||| ||  | ||||| |||||||| ||||||||||||||| | || |||||||||||||| |||  || || | | |  ||||  |   | | |   |      ||||| |      ||  ||      ||  | |  |      |  |             
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAACATGGACTTTCTTCTCAATCTGTACAGGATTTATCTATTTTCAAGAATATCAGgtac-tttctctctcacttaatatgcacaggtagcctttgctttgcatgggcactctaagaagatttaatcatataatattgaagaaaactaattaaatac

upper sequence: GRMZM2G144254_T03 (Zea mays), 5'ss of exon 7
lower sequence: AT3G26670.1 (Arabidopsis thaliana), 5'ss of exon 10
GTTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATCTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaggttcctgtttgagataatgggataatgaaaag-----tgaatcatgcattgcttaattagaaactgggtattctgttt--ttcctctgtcag--------------------------------------------------------
 |||||  ||| ||||||||| || || |||||||||||||| ||||||||||| |||||||| |||||||||||||   ||||||||||||| | ||| ||   |  || ||    | | || |||  |           |   | ||     |  ||||  | | || | |  |  ||||  |   | |||||                                                         
ATTGTCTCTATATGATGCAATTCTCATAGTTCCAATGTTTCAGATTGCTTGGACTTTCTTCTCCATCTGTACAGGATGCATTTACTTTCAAGAGTTTCAGgttcat--ctattgactacattgtgatgcttttcctctcttttctttatcttcgggctaatacggatctagatgattagtttgatcattttgtcacagaatggtgtgggtttagggatagtcgcttagataattttcttcttccttaaacag

upper sequence: GRMZM2G144254_T03 (Zea mays), 5'ss of exon 7
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 10
GTTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATCTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaggttcctgtttgagataatgggataatg-aaaagtgaatcatgcattgcttaattagaaactgggta-ttctgtttttcctctgtcag---------
||||||||| ||||||||||| || |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||| ||    ||    |     |       |  |  | ||   | | |   |    |||| |     |    |   ||  |||| | | ||             
GTTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAAATTGCTTGGACTTTCTTCTCTATTTGTACAGGATTTGTATACTTTCAGGAATATCAGgtgctctctctctctctctctctctctcttatagaacctagtgactgaaaatttaacttaggtcaatttggctccattttacttgtgctgctcactggga