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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCCAGGTTTCTTGCCTAGGGGCGTCACCGTCTTCTGAATCTAGAATGTTGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatcatttttttagctttagtaatgcgccaagctatgataattattgcttgagaaccatccaaaggccaaaaccagcagtagataatatcctttttctaagcagtcagtttaactgaaaactatttctatccgtcaacag

Basic information

species Zea mays
transcript GRMZM2G143651_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143651_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g57180.2 (Oryza sativa), 5'ss of exon 5
TATCCAGGTTTCTTGCCTAGGGGCGTCACCGTCTTCTGAATCTAGAATGTTGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatcatttttttagctttagtaatgcgccaagctatgataattattgcttgagaaccatccaaaggccaaaaccagcagtagataatatcctttttctaagcagtcagtttaactgaaaact-atttctatccgtcaacag
|||||||||||||| |||||| || ||  | ||||||   ||||||||| ||||| | || ||||| || ||| |||| || || |||||||| |||||||||||||||       ||  ||  | ||| |         |||  | |  || ||    |  | | ||||    || | | ||        |  | ||| | |  ||||| | ||||||  |||  |  |||  ||   |||||||
TATCCAGGTTTCTTCCCTAGGAGCATCGGCCTCTTCTCCTTCTAGAATGCTGAGGGCCAAGGCTGCTGGGGAGGAATCTGTGTTGAAAGAATTTCCTGAGgtgatcatc-------tacattaggcaatac---------tga--actcctgtttctacattaccgaaagttagaagcaaacat------gtcccatttatgttggcagttactttaaccaaaattttgtttgcatggatcaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32926106|gb|CF030918.1|CF030918
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|32926653|gb|CF031465.1|CF031465
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|71533831|gb|DR784590.1|DR784590
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|211264901|gb|FK979901.1|FK979901
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|67037324|gb|CO464172.1|CO464172
EST:     TGAGGACAANAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTANCA-TCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCT
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTA-CAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCT
EST: gi|31348826|gb|CD433183.1|CD433183
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|149074514|gb|EE162909.2|EE162909
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCAC
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCAC
EST: gi|148939122|gb|EC883548.2|EC883548
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCAC
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCAC
EST: gi|31998510|gb|CD662109.1|CD662109
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|211110877|gb|FL478099.1|FL478099
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|149086938|gb|EE176480.2|EE176480
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGANGTCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|78087119|gb|DV515512.1|DV515512
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTN
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCT-
EST: gi|67015444|gb|CO444193.1|CO444193
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|148977668|gb|EE026094.2|EE026094
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|148963040|gb|EE013991.2|EE013991
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|31350209|gb|CD434566.1|CD434566
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|148931470|gb|EC874468.2|EC874468
EST:     GAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTTCAA-GAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
genomic: GAGGACAAAAGCTGCAGGAGAGCAATCAGTCTT-CAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|211264900|gb|FK979900.1|FK979900
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|149096347|gb|EE182072.2|EE182072
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCAC
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCAC
EST: gi|149069994|gb|EE158394.2|EE158394
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|31354660|gb|CD439017.1|CD439017
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|32926481|gb|CF031293.1|CF031293
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|211523599|gb|FL477918.1|FL477918
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|31348834|gb|CD433191.1|CD433191
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|149069952|gb|EE158352.2|EE158352
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTA
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTA
EST: gi|32925514|gb|CF030326.1|CF030326
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|9794698|gb|BE553006.1|BE553006
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|32926805|gb|CF031617.1|CF031617
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|60352887|gb|DN219860.1|DN219860
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|211523598|gb|FL477917.1|FL477917
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|32924876|gb|CF029688.1|CF029688
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|149106264|gb|EE291962.2|EE291962
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCAT
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCAT
EST: gi|71773401|gb|DR971305.1|DR971305
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACTATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAAT
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAAT
EST: gi|32925685|gb|CF030497.1|CF030497
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|71445608|gb|DR826658.1|DR826658
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGTCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|211110876|gb|FL478098.1|FL478098
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|32925444|gb|CF030256.1|CF030256
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG
EST: gi|32925655|gb|CF030467.1|CF030467
EST:     TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAG                         GCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATTCTG
genomic: TGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 213

TATCCAGGTTTCTTGCCTAGGGGCGTCACCGTCTTCTGAATCTAGAATGTTGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGAACAGATGGGCACAATTTGCAAAGAATTGGGGTTTCCTCCCGCTTGTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 308

TATCCAGGTTTCTTGCCTAGGGGCGTCACCGTCTTCTGAATCTAGAATGTTGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGAACAGATGGGCACAATTTGCAAAGAATTGGGGTTTCCTCCCGCTTGTTG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 253

TATCCAGGTTTCTTGCCTAGGGGCGTCACCGTCTTCTGAATCTAGAATGTTGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGAACAGATGGGCACAATTTGCAAAGAATTGGGGTTTCCTCCCGCTTGTTG


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 300

TATCCAGGTTTCTTGCCTAGGGGCGTCACCGTCTTCTGAATCTAGAATGTTGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatca ... ccgtcaacagGCTACAATCATGAGGCCTGCTACCATGATTGGCACAGAAGATCGAATCCTGAACAGATGGGCACAATTTGCAAAGAATTGGGGTTTCCTCCCGCTTGTTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATCCAGGTTTCTTGCCTAGGGGCGTCACCGTCTTCTGAATCTAGAATGTTGAGGACAAAAGCTGCAGGAGAGCAATCAGTCTTCAAAGAATTCCCTGAGgtgatcatcatttttttagctttagtaatgcgccaagctatgataattattgcttgagaaccatccaaaggccaaaaccagcagtagataatatcctttttctaagcagtcagtttaactgaaaactatttctatccgtcaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA