1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacgccactgctcactagactttttggtggcgcgcctttgccgcatttttcattaatataaggagaatcttgtttttttggggggatgcag
species | Zea mays |
transcript | GRMZM2G143602_T03 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCCTGGT-AAAGTTTATGAACGCAGATAACCAGCACCEST: gi|21389960|gb|BQ528009.1|BQ528009
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCC-TGGTTAAAGTTTATGAACGCAGATAACCAGCACC
EST: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCEST: gi|20507674|gb|BQ279724.1|BQ279724
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCC
EST: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATEST: gi|60348663|gb|DN215636.1|DN215636
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGAT
EST: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAG GCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCT
genomic: AACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacg ... ggggatgcagGCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAGCTTGACCCTCAGCTTGAAGCCCTCGTTGGAAGgtatagcacgccactgctcactagactttttggtggcgcgcctttgccgcatttttcattaatataaggagaatcttgtttttttggggggatgcag
- - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG