Sequence
atgc intronic sequence ATGC exonic sequenceGGCATAAAAGAAGGCTGGTATGATGGAGCGAGCATTGCCTTTGCTGTTCTTCTAGTTGTATTTGTTACAGgtgtgccactatgacttttctctgactttctgtgttctttgtcatataacaagcagtgtgtttctattcacatcaaatcatcaagtaatatatgataaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G140328_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 5'ss of exon 7
GGCATAAAAGAAGGCTGGTATGATGGAGCGAGCATTGCCTTTGCTGTTCTTCTAGTTGTATTTGTTACAGgtgtgccactatgacttttctctgactttctgtgttctttgtcatataacaagcagtgtgtt--tctattcacatcaaatc-atcaagtaatatatgataaaa
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GGGATAAAAGAAGGCTGGTATGATGGAGCAAGCATTGCTTTTGCTGTTCTCCTAGTTGTTGTTGTTACAGgtatgtaatta-gttagatcaatcatcttacctgattatttctatg-gtcgattaatatgttaatccacttttagaaggtttatctgttgcattactgtcag-
upper sequence: GRMZM2G140328_T02 (Zea mays), 5'ss of exon 7
lower sequence: AT5G57110.2 (Arabidopsis thaliana), 5'ss of exon 8
GGCATAAAAGAAGGCTGGTATGATGGAGCGAGCATTGCCTTTGCTGTTCTTCTAGTTGTATTTGTTACAGgtgtgccactatg----acttttctctgactttct----gtgttctttgtcatataacaagcagtgtgtttctattcacatcaaatcatcaagtaatatatgataaaa---------------
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GGTATCAAAGAAGGATGGTATGATGGAGGAAGCATTGCATTTGCTGTGATTCTTGTGATTGTTGTGACGGgtaatttaacttgtttcacttttttctttttctttttaggtgtctacagacttgtttcacttaatataataattttgataatgactcttactgtgattt-tgatgctttcttctcctctgcag
upper sequence: GRMZM2G140328_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 9
GGCATAAAAGAAGGCTGGTATGATGGAGCGAGCATTGCCTTTGCTGTTCTTCTAGTTGTATTTGTTACAGgtgtgccactatgacttttctctgactttctgtgttctttgtcatataacaagcagtgtgtttctattcacatcaaatcatca-agtaatatatgataaaa----
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GGTATTAAAGAAGGATGGTATGATGGGGGGAGCATTGCCTTTGCAGTTATTCTTGTTATAGTTGTTACAGgtattaaattgtacttatttttaaacttaccatttcc----tcatactactgatc-cgtaattttttttctatctggtaattgtgggaagacagactaggagtcc
upper sequence: GRMZM2G140328_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 8
GGCATAAAAGAAGGCTGGTATGATGGAGCGAGCATTGCCTTTGCTGTTCTTCTAGTTGTATTTGTTACAGgtgtgccactatgacttttctctgactttctgtgttctttgtcatataacaagcagtgtgtttctattcacatca-aatcatcaagtaatatatgataaaa
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GGTGTGAAAGAAGGATGGTATGATGGGGGTAGCATTGCCTTTGCAGTGTTTCTTGTTATATTTGTTACTGgtat-tggcttgatgttcattattgtcttttgagtgcggctcttggctagaattaacttgaagtcaacttgatcatgattttataatagtttaaatttcatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32934372|gb|CF039184.1|CF039184EST: TGATGGAGCGAGCATTGCCTTTGCTGTTCTTCTAGTTGTATTTGTTACAG CTATCAGCGACTACAAGCAATCACTACAATTTCAAAATCTGAATGAAGAAA
genomic: TGATGGAGCGAGCATTGCCTTTGCTGTTCTTCTAGTTGTATTTGTTACAGgtgtgccact ... taattttcagCTATCAGCGACTACAAGCAATCACTACAATTTCAAAATCTGAATGAAGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCATAAAAGAAGGCTGGTATGATGGAGCGAGCATTGCCTTTGCTGTTCTTCTAGTTGTATTTGTTACAGgtgtgccactatgacttttctctgactttctgtgttctttgtcatataacaagcagtgtgtttctattcacatcaaatcatcaagtaatatatgataaaa
- - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - GCTGTT