1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATGTGAAGCATACAACCTTGGAACCGGAAAAGGAACATCAGTGTTGGAGATAGTCAATGCATTTGAGAAGGCTTCTGGAAAGgtacacctgatttaatatatttaggactccctccatttctttttagttgtcgctgtatagtgcaattttgtactatctagcgacaactaaaacgaaacgg...
species | Zea mays |
transcript | GRMZM2G138410_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAACATCAGTGTTGGAGATAGTCAATGCATTTGAGAAGGCTTCTGGAAAG AAAATCCCTTTGGTCATGGGCCAACGGCGTCCTGGTGATGCTGAGATTCTCEST: gi|149104100|gb|EE289533.2|EE289533
genomic: GAACATCAGTGTTGGAGATAGTCAATGCATTTGAGAAGGCTTCTGGAAAGgtacacctga ... atctttttagAAAATCCCTTTGATCATGGGCCAACGGCGTCCTGGTGATGCTGAGATTCTC
EST: GAACATCAGTGTTGGAGATAGTCAATGCATTTGAGAAGGCTTCTGGAAAG AAAATCCCTTTGATCATGGGCCAACGGCGTCCTGGTGATGCTGAGATTCTCEST: gi|6952532|gb|AW424600.1|AW424600
genomic: GAACATCAGTGTTGGAGATAGTCAATGCATTTGAGAAGGCTTCTGGAAAGgtacacctga ... atctttttagAAAATCCCTTTGATCATGGGCCAACGGCGTCCTGGTGATGCTGAGATTCTC
EST: GAACATCAGTGTTGGAGATAGTCAATGCATTTGAGAAGGCTTCTGGAAAG AAAATCCCTTTGGTCATGGGCCAACGGCGTCCTGGTGATGCTGAGATTCTCEST: gi|211093969|gb|FL454793.1|FL454793
genomic: GAACATCAGTGTTGGAGATAGTCAATGCATTTGAGAAGGCTTCTGGAAAGgtacacctga ... atctttttagAAAATCCCTTTGATCATGGGCCAACGGCGTCCTGGTGATGCTGAGATTCTC
EST: GAGATAGTCAATGCATTTGAGAAGGCTTCTGGAAAG AAAATCCCTTTGATCATGGGCCAACGGCGTCCTGGTGATSCTGAGATTCTC
genomic: GAGATAGTCAATGCATTTGAGAAGGCTTCTGGAAAGgtacacctga ... atctttttagAAAATCCCTTTGATCATGGGCCAACGGCGTCCTGGTGATGCTGAGATTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTGAAGCATACAACCTTGGAACCGGAAAAGGAACATCAGTGTTGGAGATAGTCAATGCATTTGAGAAGGCTTCTGGAAAGgtacacctgatttaatatatttaggactccctccatttctttttagttgtcgctgtatagtgcaattttgtactatctagcgacaactaaaacgaaacgg
- - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacgaa