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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcggctaactcatcctgttataccagttgatcttatatggctactcctgctgacagggtgcttaacctttttcccctgcag

Basic information

species Zea mays
transcript GRMZM2G137528_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 7
GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcggctaactcatcctg--ttataccagttgatcttat-atggctactcctgctgacagggtgcttaacctttttcccctgcag
||| ||||||||||||| || |||||||| |||||||| |||||| |||||||||| |||||||||||||| ||||| ||||| |||||||| ||||| ||| || | | ||||| |   |   || |    ||| || ||   |||  | ||  || |||    | ||||| | |||     | |   
GTTCTGATGGCAACAAATAGGATAGACATCTTGGATCAGGCCCTTCTGAGGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctgataacttactgtatattgtttgtgttaatttttccatgatttcttgtgttgatgatgcgcttatcttttgctttcag---

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv09s0002g05800.t01 (Vitis vinifera), 5'ss of exon 7
GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgta-tgttcggctaactcatcctgttataccagttgatcttatatggct---actcctgctgacagggtgcttaacctttttcccctgcag-----------
||||| ||||| |||||  |||| || ||| | || ||||||||  | ||||| || || || |||||||||||||||||||||||||| || | ||| ||| | | |  ||   | |   ||  ||        | |||| |   |    |   | | |    ||     |  ||| |||||| ||||            
GTTTTAATGGCTACAAATCGAATTGATATTCTTGACCAAGCCCTCCTCAGGCCAGGACGGATTGACAGGAAGATTGAGTTTCCAAATCCCAATGGGGAGgtagtatactact--tttactgtgaaatcttctgcaaccttacaatacataaaaaacggttctttggtctgctttcctctttcccttgcatgttcttgtgca

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv04s0008g04690.t01 (Vitis vinifera), 5'ss of exon 7
GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcg---gctaactcatcctgttataccagttg-atcttatatggctactcctgctgacagggtgcttaacctttttcccctgcag----------
||||||||||| |||||  | || || |||||||||||||||||  | |||||||| || || ||||||||||||||||| |||||||| ||||| || |||| ||       || |  || |  |||   || ||      |  |    | || | |||    |  || ||  ||   |     |  ||          
GTTTTGATGGCTACAAATCGCATTGATATTTTGGATCAAGCCCTCCTTAGGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttcttcattaccgtattcaattaatgcacttacgagatgaaaatttgcttcagctctt-gtttgtttttccacatctatttagaggtgcctgtgt

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 7
lower sequence: PP1S245_17V6.1 (Physcomitrella patens), 5'ss of exon 7
GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcggctaactcatcctgttataccagttgatcttatatggctactcctgctgacagggtgcttaacctttttcccctgcag----------------------------------------
|||||||||||||| ||  |||| || || |||||||||||||||||| | ||||| || || ||| ||||||| ||||| || ||||| |  || || ||||     |        |  |  | | ||| ||  |||       ||    || ||  |    | ||||   || ||| ||    |                                        
GTTTTGATGGCAACCAATCGAATTGATATCTTGGATCAAGCCCTTTTGCGTCCTGGACGAATTGACCGGAAGATCGAGTTCCCCAATCCAACTGAAGAGgtatacaaaggcgtgat-ttataatttgccatttcctctctcccaccttgctct-ctcgctcctttcttatttttcttcgccccttgtcttgtgtgagctaatctatatgattgccttgttacgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211436662|gb|FL284171.1|FL284171
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|21391089|gb|BQ529138.1|BQ529138
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211434072|gb|FL284165.1|FL284165
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211436664|gb|FL284173.1|FL284173
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211436658|gb|FL284167.1|FL284167
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211434071|gb|FL284164.1|FL284164
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211436667|gb|FL284176.1|FL284176
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211436671|gb|FL284180.1|FL284180
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211436666|gb|FL284175.1|FL284175
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|32944271|gb|CF049090.1|CF049090
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|67024358|gb|CO453107.1|CO453107
EST:     G-CCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAA-TGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211434065|gb|FL284158.1|FL284158
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211436659|gb|FL284168.1|FL284168
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211436668|gb|FL284177.1|FL284177
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|32941552|gb|CF046371.1|CF046371
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211436663|gb|FL284172.1|FL284172
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211434068|gb|FL284161.1|FL284161
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTACCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|6021527|gb|AW066455.1|AW066455
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|32945809|gb|CF050628.1|CF050628
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211436665|gb|FL284174.1|FL284174
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTTTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|4776454|gb|AI665457.1|AI665457
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|60395128|gb|DN227997.1|DN227997
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|60352642|gb|DN219615.1|DN219615
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211431472|gb|FL284151.1|FL284151
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCADRTCAAGGAAAATGAACTTGATGCG
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCA-TTCAAGGAAAATGAACTTGATGCG
EST: gi|211434062|gb|FL284155.1|FL284155
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211436669|gb|FL284178.1|FL284178
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211431471|gb|FL284150.1|FL284150
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211431470|gb|FL284149.1|FL284149
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|32839440|gb|CD979121.1|CD979121
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211436660|gb|FL284169.1|FL284169
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211434059|gb|FL284152.1|FL284152
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211436661|gb|FL284170.1|FL284170
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211434066|gb|FL284159.1|FL284159
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211434064|gb|FL284157.1|FL284157
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|213167947|gb|FM194936.1|FM194936
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
EST: gi|211434070|gb|FL284163.1|FL284163
EST:     GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC                         TCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcgg ... tcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcggctaactcatcctgttataccagttgatcttatatggctactcctgctgacagggtgcttaacctttttcccctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA