1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CATGTTTAAAGACTTCCACAAGAGACTCCAAACTGATATAAAGAAGATAGTGGATGACCGTGTTGCTGCGACTAATGCCCGTCATCGTGTGGAAGTGAGAgtaagtacagatggtttgattctcgatcgctatttaatgtactattgtagttgatatcctacatgtgagtaattttatttgcttcgtactgcccttttaatttgacattttcccctgttgtcag
species | Zea mays |
transcript | GRMZM2G136662_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGGATGACCGTGTTGCTGCGACTAATGCCCGTCATCGTGTGGAAGTGAGA CCTATTGAAGTCAACGTGGTTGCCCATCCGATACAGAGTTACGCGGTTTGGEST: gi|148961477|gb|EE012225.2|EE012225
genomic: TGGATGACCGTGTTGCTGCGACTAATGCCCGTCATCGTGTGGAAGTGAGAgtaagtacag ... ctgttgtcagCCTATTGAAGTCAACGTGGTTGCCCATCCAATACAGAGTTACGCGGTTTGG
EST: TGGATGACCGTGTTGCTGCGACTAATGCCCGTCATCGTGTGGAAGTGAGA CCTATTGAAGTCAACGTGGTTGCCCATCCAATACAGAGTTACGCGGTTTGGEST: gi|211099247|gb|FL471143.1|FL471143
genomic: TGGATGACCGTGTTGCTGCGACTAATGCCCGTCATCGTGTGGAAGTGAGAgtaagtacag ... ctgttgtcagCCTATTGAAGTCAACGTGGTTGCCCATCCAATACAGAGTTACGCGGTTTGG
EST: GTGTGGAAGTGAGA CCTATTGAAGTCAACGTGGTTGCCCATCCAATACARAGTTACSCGGTTTGGEST: gi|74236604|gb|DT644518.1|DT644518
genomic: GTGTGGAAGTGAGAgtaagtacag ... ctgttgtcagCCTATTGAAGTCAACGTGGTTGCCCATCCAATACAGAGTTACGCGGTTTGG
EST: TGGATGACCGTGTTGCTGCGACTAATGCCCGTCATCGTGTGGAAGTGAGA CCTATTGAAGTCAACGTGGTTGCCCATCCAATACAGAGTTACGCGGTTTGGEST: gi|5932669|gb|AW057030.1|AW057030
genomic: TGGATGACCGTGTTGCTGCGACTAATGCCCGTCATCGTGTGGAAGTGAGAgtaagtacag ... ctgttgtcagCCTATTGAAGTCAACGTGGTTGCCCATCCAATACAGAGTTACGCGGTTTGG
EST: TGGATGACCGTGTTGCTGCGACTAATGCCCGTCATCGTGTGGAAGTGAGA CCTATTGAAGTCAACGTGGTTGCCCATCCAATACAGAGTTACGCGGTTTGGEST: gi|6194835|gb|AW146939.1|AW146939
genomic: TGGATGACCGTGTTGCTGCGACTAATGCCCGTCATCGTGTGGAAGTGAGAgtaagtacag ... ctgttgtcagCCTATTGAAGTCAACGTGGTTGCCCATCCAATACAGAGTTACGCGGTTTGG
EST: TGGATGACCGTGTTGCTGCGACTAATGCCCGTCATCGTGTGGAAGTGAGA CCTATTGAAGTCAACGTGGTTGCCCATCCAATACAGAGTTACGCGGTTTGGEST: gi|76918618|gb|DV167378.1|DV167378
genomic: TGGATGACCGTGTTGCTGCGACTAATGCCCGTCATCGTGTGGAAGTGAGAgtaagtacag ... ctgttgtcagCCTATTGAAGTCAACGTGGTTGCCCATCCAATACAGAGTTACGCGGTTTGG
EST: TGGATGACCGTGTTGCTGCGACTAATGCCCGTCATCGTGTGGAAGTGAGA CCTATTGAAGTCAACGTGGTTGCCCATCCAATACAGAGTTACGCGGTTTGG
genomic: TGGATGACCGTGTTGCTGCGACTAATGCCCGTCATCGTGTGGAAGTGAGAgtaagtacag ... ctgttgtcagCCTATTGAAGTCAACGTGGTTGCCCATCCAATACAGAGTTACGCGGTTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGTTTAAAGACTTCCACAAGAGACTCCAAACTGATATAAAGAAGATAGTGGATGACCGTGTTGCTGCGACTAATGCCCGTCATCGTGTGGAAGTGAGAgtaagtacagatggtttgattctcgatcgctatttaatgtactattgtagttgatatcctacatgtgagtaattttatttgcttcgtactgcccttttaatttgacattttcccctgttgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG