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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcctccccgttctagtttatagatacacatattaagcatggcgagcaataatttgttgttttttgcattttagccaaaaaaaagagaagggtt...

Basic information

species Zea mays
transcript GRMZM2G135283_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 7
ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgt-cattttcctccccgttctagtttatagatacacatattaagcatggcgagcaataatttgttgttttttgcattttagccaaaaaaaagagaagggtt-
||||| ||||||||||| || |||  ||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| || | ||||||   | ||  ||| |    |  |  ||| | | |   ||    |   |  || |||| |   | | ||     |       ||  ||  
ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtcctccttat-ctgttttgttttaatgc-catttaacttattgaattctctatcattcttttataggtatgagttttcattggacaaaacgtgt

upper sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 8
ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgt------------cattttcctccccgttctagt--ttatagatacacat-attaagcatggcgagcaataatttgttgtt-ttttgca-ttttagccaaaaaaaagagaagggtt----
||||| || || |||||||||||    ||||||||||||||||||||||| || |||||| | ||||| || ||||  ||||| || || |||||             |||||  ||   ||| |  |  || ||| ||||  | ||| |   |  |  |  |   |||  |||  | |||   |||| |  |    |||     |   |    
ACTGATACCAAAAAGATATCTGCTGTCTCAATATTTTTTGAGACAATGCCATATAGATTGAACGAAAGTACGGGATACATTGACTATGACCAGgtatcattgcaggatatttttatcatggttgtgatgcttttagctacatttcattgatattttcatgtcacccttttatgtcatcttgtggtttttgtgatgtgaaaatcttgaaatgcag

upper sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA14G36280.1 (Glycine max), 5'ss of exon 7
ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcatt---ttcctccccgttctagtttatagatacacatattaagcatggcgagcaat--aatttgttg--ttttttgcattttagccaaaaaaaagagaagggtt
|||||||| ||||||||||| ||    || ||||| ||||| |||||||| ||||||||| |||| |||||||| |  || ||||| || |||||   |   | ||      ||||   || | ||||  | |  | | ||  | ||    |  ||   || |   | |||  |||| ||         |  |       
ACTGACACCAAGAAGATATCGGCTGTATCTATATTCTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGgtaggtaggtaccattgtattctgtgttgtggatattctttcttatcaaagagaatcttttaagcagtcggactgtttctatttcagttgctgttcactg-------

upper sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA02G38160.2 (Glycine max), 5'ss of exon 7
ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcatt---ttcctccccgttctagtttatagatacacatattaagcatggcgagcaat--aatttgttg--ttttttgcattttagccaaaaaaaagagaagggtt
|||||||| ||||||||||| ||    || ||||||||||| |||||||| ||||||||| |||| |||||||| |  || ||||| || |||||   |   | ||      ||||   || | ||||    |  | | ||  |  |    |  ||   ||     | |||  |||| || ||  | | |          
ACTGACACCAAGAAGATATCAGCTGTATCTATATTTTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGgtaggtaggtaccattgtattctgtgttgtggatatttcttcttatcaaagaaaatcttttaagcagtcagactgtttctatttcagtcagtagagatta-------

upper sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 7
lower sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 7
ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattt---tcctccccgttctagtttatagataca-catattaagcatggcgagcaataatttgttgttttttgcattttagccaaaaaaaa-----gagaagggtt------------------------------------------------------------------
|||||||| ||||| ||||| ||    || || ||||||||||||||||| |||||||||||||| | |||||| |  |||||||| || |||||   ||   || |  ||    ||| |||  | | || |||  ||    |  |   |||||     |||   | ||  ||| |  || | ||       |   | ||||                                                                  
ACTGACACGAAGAAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATACAGATTGGATGAGAACACTGGTTACATTGATTATGACCAGgttggttagttcatagccagcttagcttaatgcttcaacattctatctttatc---caatataccattgagatatgggtttaatacatacaagcttttcgtttacggttcttatgttaagtaattgaacagtttttaaaccaaagtttatttatttgtgatacaataatttgcag

upper sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 7
lower sequence: Vv00s0211g00100.t01 (Vitis vinifera), 5'ss of exon 7
ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcctccccgttctagtttatagatacacatattaagcatggcgagcaataatttgttgttttttgcattttagccaaaaaaaagagaagggtt--
|||||||| ||||| |||||||||   || |||||||||||||||||||| || |||||| |||| |||||||| |  ||||| || || ||||| | |||||     | | ||    |    | |   || |         ||||||   |||  | |  |||  | | ||        | | |    | ||  
ACTGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttccattttgct-tatagcaggagttcttttagttccatccctgagcaaatttttact-tagtttttactataatattttcacacaacttgtttaa

upper sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 7
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 7
ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgt-cattttcctccccgttctagtttatagatacacatat-taagcatggcgagcaataatttgttgttttttgcattttagccaaaaaaaagagaagggtt
|| ||||| ||||||||||||||    || |||||||||||||||||||| ||||||||||||||||  |||||||  ||||| || || ||||| ||||| | || |  |     | | |   |     | | |     |  | |   |   | |     ||  ||||  |  |  |    |         |  
ACCGACACCAAGAAGATATCTGCTGTGTCTATATTTTTTGAGACAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAGgtgcatttacatctctctctctctctctctctctctctctctctatctatctatggaagttcttccaattgatgcaaatatggtatgctaccatttttag--

upper sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 7
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 7
ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcctccccgttctagtttatagatacacatattaagcatggcgagcaataatttgttgttttttgcattttagccaaaaaaaagagaagggtt--
|| ||||| ||||| |||||||||   || |||||||||||||||||||| || |||||| |||| |||||||| |  ||||| || || ||||| | |||||     | | ||    |    | |   || |         ||||||   |||  | |  |||  | | ||        | | |    | ||  
ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttccattttgct-tatagcaggagttcttttagttccatccctgagcaaatttttact-tagtttttactataatattttcacacaacttgtttaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148946029|gb|EC891328.2|EC891328
EST:     CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG                         TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: gi|149012532|gb|EE042603.2|EE042603
EST:     CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG                         TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: gi|211286148|gb|FL173729.1|FL173729
EST:     A-TGCCTTACAGATTGGATGAAAGCACTGGGAT-GATTGATTACGATCAG                         TTGGAGAAAAGCGCTGTTCTTTTTAGGC-AAAGTTGAATCATGGCTGGTGC
genomic: AATGCCTTACAGATTGGATGAAAGCACTGG-ATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGA-TCATTGCTGGTGC
EST: gi|148969981|gb|EE020895.2|EE020895
EST:     CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG                         TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: gi|71299012|gb|DR785498.1|DR785498
EST:     CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG                         TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: gi|148947246|gb|EC892606.2|EC892606
EST:     CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG                         TTGGAGAANAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: gi|149081312|gb|EE170425.2|EE170425
EST:     CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG                         TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: gi|148945831|gb|EC891120.2|EC891120
EST:     CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG                         TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: gi|148973319|gb|EE024404.2|EE024404
EST:     CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG                         TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: gi|149089957|gb|EE179246.2|EE179246
EST:     CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG                         TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA