1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAATCGGCATTTTTGAAGATGCCCTTTTGGTTGTCCTTTCGACTTCAACACTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAGgtacttgccctgattgcttgacccattttgtctgtcttctgaatttgggagcatccgcattgtatgcaacgtagccgttcttaccatatgtatatcaacacccaaaactcatgtatactcgcaaatgatttattattagtattatttttgctatggttttttcctaacttgggcttatgttttgcgtttgcag
species | Zea mays |
transcript | GRMZM2G134930_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTGTGTCTTGTAAGGCTAGCTGCAGCTGGGTTTGACGTCA-CAATGAAAG AATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAGEST: gi|211049273|gb|FL434213.1|FL434213
genomic: TTGTGTC-TGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAGgtacttgccc ... gcgtttgcagAATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAG
EST: CTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAG AATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAGEST: gi|149058750|gb|EE156768.2|EE156768
genomic: CTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAGgtacttgccc ... gcgtttgcagAATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAG
EST: CTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAG AATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAGEST: gi|78114581|gb|DV532969.1|DV532969
genomic: CTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAGgtacttgccc ... gcgtttgcagAATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAG
EST: CTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAG AATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAGEST: gi|5739847|gb|AI947537.1|AI947537
genomic: CTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAGgtacttgccc ... gcgtttgcagAATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAG
EST: CTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAG AATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAGEST: gi|78022494|gb|DV490881.1|DV490881
genomic: CTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAGgtacttgccc ... gcgtttgcagAATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAG
EST: CTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAG AATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAGEST: gi|91051536|gb|EB161954.1|EB161954
genomic: CTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAGgtacttgccc ... gcgtttgcagAATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAG
EST: GTTTAACGTCACCAACGAAAG AATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAGEST: gi|211049274|gb|FL434214.1|FL434214
genomic: GTTTAACGTCACCAACGAAAGgtacttgccc ... gcgtttgcagAATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAG
EST: CTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAG AATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAGEST: gi|110518128|gb|EE022715.1|EE022715
genomic: CTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAGgtacttgccc ... gcgtttgcagAATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAG
EST: CTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAG AATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAGEST: gi|89250169|gb|DY621955.1|DY621955
genomic: CTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAGgtacttgccc ... gcgtttgcagAATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAG
EST: CTTGTGTCTGTAAGGCTAGCGGCAGCTGGGTTTAACGTCACCAACGAAAG AATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAGEST: gi|24934212|gb|CA452430.1|CA452430
genomic: CTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAGgtacttgccc ... gcgtttgcagAATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAG
EST: CTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAG AATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAG
genomic: CTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAGgtacttgccc ... gcgtttgcagAATATGAATATCATTTTCATGCCTAAGAAGTGAAGCTGCAGTGCGCTAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATCGGCATTTTTGAAGATGCCCTTTTGGTTGTCCTTTCGACTTCAACACTTGTGTCTGTAAGGCTAGCTGCAGCTGGGTTTAACGTCACCAACGAAAGgtacttgccctgattgcttgacccattttgtctgtcttctgaatttgggagcatccgcattgtatgcaacgtagccgttcttaccatatgtatatcaacacccaaaactcatgtatactcgcaaatgatttattattagtattatttttgctatggttttttcctaacttgggcttatgttttgcgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG