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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACTTTGGCTTCCGCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAGgttagagacttcttccttatctgctattgtaagtgatctggtattactttcatgtatttaaactatgatcaatgtttctttacttttgttgaactgtagt...

Basic information

species Zea mays
transcript GRMZM2G134770_T04
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134770_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g41010.4 (Oryza sativa), 5'ss of exon 7
TGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACTTTGGCTTCCGCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAGgttagagacttcttccttatctgctattgtaagtgatctggtattactttcatgtatttaaactatgatcaatgtttctttacttttgttgaactgtagt-
||||||||||||| | || || |||||| ||||||| |||||||  ||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||| | |    ||  | |  | | ||  || ||||   |   ||||   ||  |     |||| |||||   || |||||||   |   |  ||   | || 
TGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAGgt-acaattctccacttcttgtacttgtgcaagttcccacctattgtattactactactaaattatgaaatatctttctttctataaatctaaaattggtc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5005812|gb|AI711874.1|AI711874
EST:     CACAGTCTGTAATATGAGAAAGTGCAACACACCTAGGACCTGAAAACCAG                         GGATCTAAGCCTGATGGTTTAAGAGGGTCAA
genomic: CACAGTCTGTAATATGAGAAAGTGCAACACACCTA-GACCTGAAAACCAGgttagagact ... ctttgtgcagGGATCTAAGCCTGATGGTTTAAGAGGGTCAA
EST: gi|71428348|gb|DR809398.1|DR809398
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAG                         GGATCTAAGCCTGATGGTTTAAGAGGGTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAGgttagagact ... ctttgtgcagGGATCTAAGCCTGATGGTTTAAGAGGGTCAA
EST: gi|12970927|gb|BG267228.1|BG267228
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAG                         GGATCTAAGCCTGATGGTTTAAGAGGGTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAGgttagagact ... ctttgtgcagGGATCTAAGCCTGATGGTTTAAGAGGGTCAA
EST: gi|32943442|gb|CF048261.1|CF048261
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAG                         GGATCTAAGCCTGATGGTTTAAGAGGGTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAGgttagagact ... ctttgtgcagGGATCTAAGCCTGATGGTTTAAGAGGGTCAA
EST: gi|94474683|gb|EB703641.1|EB703641
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAG                         GGATCTAAGCCTGATGGTTTAAGAGGGTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAGgttagagact ... ctttgtgcagGGATCTAAGCCTGATGGTTTAAGAGGGTCAA
EST: gi|78112738|gb|DV531132.1|DV531132
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAG                         GGATCTAAGCCTGATGGTTTAAGAGGGTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAGgttagagact ... ctttgtgcagGGATCTAAGCCTGATGGTTTAAGAGGGTCAA
EST: gi|32841271|gb|CD980952.1|CD980952
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAG                         GGATCTAAGCCTGATGGTTTAAGAGGGTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAGgttagagact ... ctttgtgcagGGATCTAAGCCTGATGGTTTAAGAGGGTCAA
EST: gi|32839908|gb|CD979589.1|CD979589
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAG                         GGATCTAAGTCTGATGGTTTAAGAGGGTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAGgttagagact ... ctttgtgcagGGATCTAAGCCTGATGGTTTAAGAGGGTCAA
EST: gi|88752563|gb|DY536704.1|DY536704
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAG                         GGATTTAAGCCTGATGGTTTAAGAGGGTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAGgttagagact ... ctttgtgcagGGATCTAAGCCTGATGGTTTAAGAGGGTCAA
EST: gi|211158909|gb|FK993540.1|FK993540
EST:     GTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAG                         GGWTCTAAGCCTGATGGTTTAAGAGGGTCAA
genomic: GTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAGgttagagact ... ctttgtgcagGGATCTAAGCCTGATGGTTTAAGAGGGTCAA
EST: gi|32841323|gb|CD981004.1|CD981004
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAG                         GGATCTAAGCCTGATGGTTTAAGAGGGTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAGgttagagact ... ctttgtgcagGGATCTAAGCCTGATGGTTTAAGAGGGTCAA
EST: gi|32835369|gb|CD975047.1|CD975047
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAG                         GGATCTAAGCCTGATGGTTTAAGAGGGTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAGgttagagact ... ctttgtgcagGGATCTAAGCCTGATGGTTTAAGAGGGTCAA
EST: gi|32840727|gb|CD980408.1|CD980408
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAG                         GGATCTAAGCCTGATGGTTTAAGAGGGTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAGgttagagact ... ctttgtgcagGGATCTAAGCCTGATGGTTTAAGAGGGTCAA
EST: gi|78026571|gb|DV494958.1|DV494958
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAG                         GGATCTAAGCCTGATGGTTTAAGAGGGTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAGgttagagact ... ctttgtgcagGGATCTAAGCCTGATGGTTTAAGAGGGTCAA
EST: gi|31350190|gb|CD434547.1|CD434547
EST:     ACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAG                         GGATCTAAGCCTGATGGTTTAAGAGGGTCAA
genomic: ACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAGgttagagact ... ctttgtgcagGGATCTAAGCCTGATGGTTTAAGAGGGTCAA
EST: gi|32841497|gb|CD981178.1|CD981178
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAG                         GGATCTAAGCCTGATGGTTTAAGAGGGTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGAAAACCAGgttagagact ... ctttgtgcagGGATCTAAGCCTGATGGTTTAAGAGGGTCAA
EST: gi|89247194|gb|DY618980.1|DY618980
EST:     AGACCTGAAAACCAG                         GGATCTAAGCCTGATGGTTTAAGAGGGTCAA
genomic: AGACCTGAAAACCAGgttagagact ... ctttgtgcagGGATCTAAGCCTGATGGTTTAAGAGGGTCAA