ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

TGGTATTGCTCATTTCTATGAGGGCTACTATGCTAACAAAGGAATCAAGGTTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactgaacactctgcagattcagttaatcaattttataatgtgtgctctgaatgttattgttcaccttaatggatgccag

Basic information

species	Zea mays
transcript	GRMZM2G134708_T01
intron #	7
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G134708_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g44340.1 (Oryza sativa), 5'ss of exon 7

TGGTATTGCTCATTTCTATGAGGGCTACTATGCTAACAAAGGAATCAAGGTTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactgaacactctgcagat-tcagttaatcaattttataatgtgtgctctgaatgttattgttcaccttaatggatgccag-------------
|||  |||||  |||||| ||||| ||||| ||||||||||||||| |  |  ||||||| || || ||||||||||| || ||||||||||| |||||||||||||||       ||| || |  || ||| || | |  || || | |||| |||| |  | ||||||||||  |   |                  
TGGCCTTGCTGCTTTCTACGAGGGATACTACGCTAACAAAGGAATCCATATCATAAAGGGAACCGTGGCTGTTGGTTTTGATGCTGATGCCAATGGAGATgtgagcact-------ctgtagttaccacttagtccagt--atcatct-tgctgtgaaggcaaatgttcaccttgttaattttttttttctgttggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|32923590|gb|CF028402.1|CF028402

EST:     GTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32921847|gb|CF026659.1|CF026659

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32922844|gb|CF027656.1|CF027656

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|149089132|gb|EE178315.2|EE178315

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGT

EST: gi|32839220|gb|CD978901.1|CD978901

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|71445023|gb|DR826073.1|DR826073

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGT

EST: gi|32920310|gb|CF025122.1|CF025122

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32922417|gb|CF027229.1|CF027229

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32836981|gb|CD976659.1|CD976659

EST:     TTGTAAAGGGCACGGGTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32923140|gb|CF027952.1|CF027952

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|44682264|gb|CK787312.1|CK787312

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32847254|gb|CD986935.1|CD986935

EST:     TTGTAAAGGGCACGGCTGCTGCTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32923403|gb|CF028215.1|CF028215

EST:     GTGTAAAGGGCACGGTTGCTGTTGGGTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32922493|gb|CF027305.1|CF027305

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32921861|gb|CF026673.1|CF026673

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|71439293|gb|DR820343.1|DR820343

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGT

EST: gi|32920363|gb|CF025175.1|CF025175

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32922231|gb|CF027043.1|CF027043

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATT

EST: gi|32921955|gb|CF026767.1|CF026767

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|71298889|gb|DR785439.1|DR785439

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCTACGGAGAT                         GTCACTACAGTGAAGT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGT

EST: gi|32923263|gb|CF028075.1|CF028075

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32922296|gb|CF027108.1|CF027108

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32923579|gb|CF028391.1|CF028391

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|67014083|gb|CO442832.1|CO442832

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32839119|gb|CD978800.1|CD978800

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATAGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|6918570|gb|AW400100.1|AW400100

EST:     GCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: GCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32920482|gb|CF025294.1|CF025294

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|113703090|gb|EE680594.1|EE680594

EST:     GGGCACGGTTGCTGTTGG-TTCGGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: GGGCACGGTTGCTGTTGGTTTC-GACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32923589|gb|CF028401.1|CF028401

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32837202|gb|CD976880.1|CD976880

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATAGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32922933|gb|CF027745.1|CF027745

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGGTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32923287|gb|CF028099.1|CF028099

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32922893|gb|CF027705.1|CF027705

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|148941238|gb|EC886132.2|EC886132

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTT

EST: gi|148936977|gb|EC881144.2|EC881144

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGT

EST: gi|32836497|gb|CD976175.1|CD976175

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATAGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|148940672|gb|EC885484.2|EC885484

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCA-CGGAGAT                         GTCACTACAGTGA
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGA

EST: gi|32923539|gb|CF028351.1|CF028351

EST:     GTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGGT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|91056173|gb|EB166591.1|EB166591

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32923175|gb|CF027987.1|CF027987

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|148932994|gb|EE285869.2|EE285869

EST:     TGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCTCA-CGGAGAT                         GTCACTACAGTGAAAGT-GAAGAATGGAAGTGTTCTCGAAGCTGATATTGT
genomic: TGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGC-CAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAA-GTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGT

EST: gi|32922583|gb|CF027395.1|CF027395

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32920371|gb|CF025183.1|CF025183

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|24934486|gb|CA452704.1|CA452704

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32923611|gb|CF028423.1|CF028423

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32922528|gb|CF027340.1|CF027340

EST:     TTGTAAAGGGCACGGCTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAAG-GAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGAT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACA-GTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGAT

EST: gi|32920307|gb|CF025119.1|CF025119

EST:     TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

EST: gi|32923404|gb|CF028216.1|CF028216

EST:     TTGTAAAGGGCCCGGTTGCTGTTGGTTTCGCCGCTGATGCCACCGGAGAT                         GTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT
genomic: TTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 42

TGGTATTGCTCATTTCTATGAGGGCTACTATGCTAACAAAGGAATCAAGGTTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactg ... tggatgccagGTCACTACAGTGAAGTTGAAGAATGGAAGTGTTCTCGAAGCTGATATTGTTATTGTTGGCGTCGGCGGCAGGCCATTGACGCGTCTCTTCATAGGCCAAG

Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 496

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 535

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 231

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTATTGCTCATTTCTATGAGGGCTACTATGCTAACAAAGGAATCAAGGTTGTAAAGGGCACGGTTGCTGTTGGTTTCGACGCTGATGCCAACGGAGATgtgagcactgaacactctgcagattcagttaatcaattttataatgtgtgctctgaatgttattgttcaccttaatggatgccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT