1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAGgtctggactcttgcccatgtcttccagtccccttccacaatctgcccatagcgtttactattgtcttcatttctcctggacag
species | Zea mays |
transcript | GRMZM2G133959_T03 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAG ATAAAATTTATTGTAGGACTGTATCCATTTTTAAAGATGAACAAGAGTTCTEST: gi|76015724|gb|DT942894.1|DT942894
genomic: CAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAGgtctggactc ... tcctggacagATAAAATTTATTGTAGGACTGTATCCATTTTTAAAGATGAACAAGAGTTCT
EST: CAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAG ATAAAATTTATTGTAGGACTGTATCCATTTTTTAAAGATGEST: gi|71431549|gb|DR812599.1|DR812599
genomic: CAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAGgtctggactc ... tcctggacagATAAAATTTATTGTAGGACTGTATCCATTTTT-AAAGATG
EST: CAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAG ATAAAATTTATTGTAGGACTGTATCCATTTTTAAAGATGAACAAGAGTTCTEST: gi|71445212|gb|DR826262.1|DR826262
genomic: CAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAGgtctggactc ... tcctggacagATAAAATTTATTGTAGGACTGTATCCATTTTTAAAGATGAACAAGAGTTCT
EST: CAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAG ATAAAATTTATTGTAGGACTGTATCCATTTTTAAAGATGAACAAGAGTTCTEST: gi|78080386|gb|DV508798.1|DV508798
genomic: CAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAGgtctggactc ... tcctggacagATAAAATTTATTGTAGGACTGTATCCATTTTTAAAGATGAACAAGAGTTCT
EST: CAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAG ATAAAATTTATTGTAGGACTGTATCCATTTTTAAAGATGAACAAGAGTTCTEST: gi|76290046|gb|DV029614.1|DV029614
genomic: CAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAGgtctggactc ... tcctggacagATAAAATTTATTGTAGGACTGTATCCATTTTTAAAGATGAACAAGAGTTCT
EST: CAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAG ATAAAATTTATTGTAGGACTGTATCCATTTTTAAAGATGAACAAGAGTTCTEST: gi|71431548|gb|DR812598.1|DR812598
genomic: CAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAGgtctggactc ... tcctggacagATAAAATTTATTGTAGGACTGTATCCATTTTTAAAGATGAACAAGAGTTCT
EST: CAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAG ATAAAATTTATTGTAGGACTGTATCCATTTTTAAAGATGAACAAGAGTTCT
genomic: CAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAGgtctggactc ... tcctggacagATAAAATTTATTGTAGGACTGTATCCATTTTTAAAGATGAACAAGAGTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAGgtctggactcttgcccatgtcttccagtccccttccacaatctgcccatagcgtttactattgtcttcatttctcctggacag
- - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - AAGAGA