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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTAGAGATATCCTGATGCGTGTTATCGCCCAAAATCTTCCTCCTGAGTCCACTACAGTCGAGAAGgcaagtcacataataattatctgtgtcattatgcagtcacatttcattattctctaccttctcataatctcatcaactaacttacatcatgttcggaactcctttccacag

Basic information

species Zea mays
transcript GRMZM2G133621_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133621_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g69900.1 (Oryza sativa), 5'ss of exon 7
ATCTAGAGATATCCTGATGCGTGTTATCGCCCAAAATCTTCCTCCTGAGTCCACTACAGTCGAGAAGgcaagtcacataataattatctgtgtcattatgcagtcacatttcattattctctaccttctcataatctcatcaactaac-ttacatcatgttcggaactcctttccacag
 |||||||||||  ||||||||||||| ||||| ||||| || ||||| || ||||| || ||||||| |||  |              || | |  ||| | |     |    |||  | |      || ||||||| | ||||| | |  ||||||| | | |||||||||| ||||
CTCTAGAGATATTTTGATGCGTGTTATAGCCCAGAATCTCCCACCTGAATCTACTACTGTTGAGAAGgtaaggaa--------------gtcttaacatggaatg----tctgctatgtttt------tcttaatctctttaactatcatggcatcatgcttgaaactcctttctacag

upper sequence: GRMZM2G133621_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 8
ATCTAGAGATATCCTGATGCGTGTTATCGCCCAAAATCTTCCTCCTGAGTCCACTACAGTCGAGAAGgcaagtcacataataattatctgtgtcattatgcagtcacatttcattattctct---acctt-ctcataatctcatcaactaacttacatcatgttcg-gaactcctttccacag--------------------------------------------------------------------
 || |  |||||||||||||| || || || |||||||||| ||| || |||||| |||| ||||||| |  |    |    |   | | |||||  ||  | || || ||| || |   ||   || || ||   |||      || |   |  | |  |||  | ||| || |    | |                                                                     
TTCAAAGGATATCCTGATGCGGGTCATAGCACAAAATCTTCATCCAGAATCCACTCCAGTGGAGAAGgtattt---gtctccagcctttctgtcaaaataaaatc-caattcgttgtgtccttaaactttgctagaaatgattataaatgtgtcgcctattgtctgtgaattcttcatgataaactctcttatgaacaaaaaggataatgacatttaactctgaatataactttttttatttcatgttcag