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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAGCTGGACGACATGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtcacattctttagaaaatttgaaggtattactgtatcaacattctttatttcatgtataggaacacattagtttttttttgtaaaaagaacag...

Basic information

species Zea mays
transcript GRMZM2G133213_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133213_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g59930.1 (Oryza sativa), 5'ss of exon 7
GATGAGCTGGACGACATGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtcacattctttagaaaatttgaaggtattactgtatcaacattctttatttcatgtataggaacacattagtttttttttgtaaaaagaacag-------
|| || |||||| |||||||||||||||| ||||  |||||||||||||||||||| |||||||||||  |   |  || |||     | |||  | | |||  ||||||||||| |  || |  |  || |      || ||| |||  |    | |  |  |         
GAAGAACTGGACAACATGGCCAAAACCTACCCTGATCGCTTTAAGATCTACTATGTCTTGAATCAGgt--gaaccctatgcttctattattttacaag-atttgtgtatcaacat-cagtactctagatacatat---caatagctttgctggacacagtggtctccaggatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71448609|gb|DR829659.1|DR829659
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|149102560|gb|EE287919.2|EE287919
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|76925297|gb|DV170368.1|DV170368
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|33094787|gb|CF054781.1|CF054781
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|78021300|gb|DV489687.1|DV489687
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|32847392|gb|CD987073.1|CD987073
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|211135585|gb|FL028679.1|FL028679
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|50324317|gb|CO519443.1|CO519443
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|32939915|gb|CF044734.1|CF044734
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|211135584|gb|FL028678.1|FL028678
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGRTGWTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|71762916|gb|DR960853.1|DR960853
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATTTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|32931398|gb|CF036210.1|CF036210
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTGCTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|149037731|gb|EE155393.2|EE155393
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACT
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACT
EST: gi|32847563|gb|CD987244.1|CD987244
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|87152328|gb|DY397117.1|DY397117
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|211135583|gb|FL028677.1|FL028677
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|148961502|gb|EE012253.2|EE012253
EST:     TGGCCAAAACCTATCCTGGGCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|76012143|gb|DT939313.1|DT939313
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|149082026|gb|EE171198.2|EE171198
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAAGGAA-TGAT
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAA-GGAAATGAT
EST: gi|32837232|gb|CD976910.1|CD976910
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|110942132|gb|EE162289.1|EE162289
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTTTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|32858270|gb|CD997951.1|CD997951
EST:     GCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATNNCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGAT
genomic: GCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAAT--CAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGAT
EST: gi|110222928|gb|EC904826.1|EC904826
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATTTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTTTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|5871734|gb|AW018205.1|AW018205
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|76291173|gb|DV030741.1|DV030741
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTTTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|60353457|gb|DN220430.1|DN220430
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|71767235|gb|DR965172.1|DR965172
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|60353485|gb|DN220458.1|DN220458
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATTTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|78080766|gb|DV509178.1|DV509178
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|67014854|gb|CO443603.1|CO443603
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGA-CTACTATGTGTNGAATCAG                         CCTNCTGAGAACTGGAACNGGNTG-TGTNGGGGTTTGTGTCTAAGGAAATG
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAAC-GG-TGGTGTTGGG-TTTGTGTCTAAGGAAATG
EST: gi|60395988|gb|DN228858.1|DN228858
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGG
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGG
EST: gi|149081654|gb|EE170805.2|EE170805
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|149080052|gb|EE169070.2|EE169070
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|76291174|gb|DV030742.1|DV030742
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGG
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGG
EST: gi|32926907|gb|CF031719.1|CF031719
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|19058065|gb|BM736732.1|BM736732
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|32836716|gb|CD976394.1|CD976394
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|7162318|gb|AW519925.1|AW519925
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|111189782|gb|EE287918.1|EE287918
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|93017179|gb|EB642699.1|EB642699
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATTTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTTTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|110941247|gb|EE161404.1|EE161404
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|50324318|gb|CO519444.1|CO519444
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAAC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAAC
EST: gi|10191564|gb|BE761640.1|BE761640
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|32847795|gb|CD987476.1|CD987476
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAAGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|148958580|gb|EC904827.2|EC904827
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|93014585|gb|EB640105.1|EB640105
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|50328081|gb|CO523207.1|CO523207
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|149037730|gb|EE155392.2|EE155392
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATTTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTTTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|32930913|gb|CF035725.1|CF035725
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|32837750|gb|CD977428.1|CD977428
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|33093863|gb|CF053857.1|CF053857
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|93014408|gb|EB639928.1|EB639928
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|50332760|gb|CO527886.1|CO527886
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|32926813|gb|CF031625.1|CF031625
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|32941942|gb|CF046761.1|CF046761
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|149080051|gb|EE169069.2|EE169069
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|32925558|gb|CF030370.1|CF030370
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTTAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|78080765|gb|DV509177.1|DV509177
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTTTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|78109073|gb|DV527490.1|DV527490
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|60357354|gb|DN224327.1|DN224327
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|113702377|gb|EE679881.1|EE679881
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|60397090|gb|DN229909.1|DN229909
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|32926814|gb|CF031626.1|CF031626
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: gi|6056550|gb|AW090940.1|AW090940
EST:     TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG                         CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTT
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 356

GATGAGCTGGACGACATGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 618

GATGAGCTGGACGACATGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 628

GATGAGCTGGACGACATGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 588

GATGAGCTGGACGACATGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGAGCTGGACGACATGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtcacattctttagaaaatttgaaggtattactgtatcaacattctttatttcatgtataggaacacattagtttttttttgtaaaaagaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaagaa