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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTTCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATCGCTTTTGTGGAATTTGTGATGgttagctagcaaaccttcttcatatttgtgcatttattttgagggaaatactttgcgtagaaatcgcctgcagtgcgcgatttaaatatgtttttag

Basic information

species Zea mays
transcript GRMZM2G132286_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132286_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 8
GTCTTTCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATCGCTTTTGTGGAATTTGTGATGgttagc-tagcaaaccttcttcatatttgtgcatttattttgaggg---aaatactttgcgtagaaatcgcctgcagtgcgcgattta-aatatgtttttag
|| | |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||  |  |   |||  |||||||||||  |    |  ||       | | || ||   |    |  |     |||   | |   | ||||      |  
GTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGgtcagtatgtcttgcctgtttcatatttgtctaaaattgctgcatttctacacacattaaatttttagtgttactagttgacaacacagaatagcacact--

upper sequence: GRMZM2G132286_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv02s0025g02740.t01 (Vitis vinifera), 5'ss of exon 9
GTCTTTCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATCGCTTTTGTGGAATTTGTGATGgttagctagcaaaccttcttcatatttgtgcatttattttgagggaaatactttgcgtagaaatcgcctgcagtgcgcgatttaaatatgtttttag----
|| | |||  ||||| | ||||| ||||| |||||||||||||||||||| ||||| || ||| | ||||| |  | ||      |||| || | | | | || |  |||  |      | ||  |  || ||       | |   |    |  |||  |||  |     
GTTTATCGTTTGAGGCTTCTTGGAGACTATCATCATTCTACTCGCATCGCATTTGTTGAGTTTATAATGgt-aattggctgtttctctttatctatttactttaagattgttgttggatcattaagatgacatgctgataattttactggatgtatagatttccatttct

upper sequence: GRMZM2G132286_T01 (Zea mays), 5'ss of exon 7
lower sequence: PP1S62_224V6.1 (Physcomitrella patens), 5'ss of exon 8
GTCTTTCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATCGCTTTTGTGGAATTTGTGATGgttagctagcaaaccttcttcatatttgtgcattt---attttgag--ggaaatactttgcgtagaaatcgcctgcagtgcgcgatttaaatatgtttttag
||   |||||| || ||| | |||||||| ||||| |||||||| ||||| ||||| || ||||||||||| || |       ||| |      ||||     |   |||||| |   ||| || ||     || || |||    | |  |  |||   |||     | | 
GTTGCTCGGCTAAGATTGTTGGGTGACTATCATCACTCTACTCGAATCGCATTTGTCGAGTTTGTGATGgtaagttttatgctcttttcggagcttgtattggttagattttgtgtcagaactaattgtttgagtaaccgcagcgacttggtcattaggata-accctga-