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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCACTGATCTGTTCTTCCAGGACAGgtctgtctgttacaatctcaatatttgtcatttgctgacatgaaattacaatttgtaccattctggcaatagtagttttgggagcagcattttattatca...

Basic information

species Zea mays
transcript GRMZM2G132144_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132144_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA02G33770.1 (Glycine max), 5'ss of exon 4
AGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCACTGATCTGTTCTTCCAGGACAGgtctgtctgttacaatctc-------aatatttgtcatttgctgacatgaaattacaatttgtaccattctggcaatagtagttttgggagcag-cattttattatca------------------------------------------------------
|| | || | ||| ||||||||||||||||||  |||||||||||| ||||| ||||| ||||| ||||     || | ||||||||||   ||||||| || || || ||||  |||         |||  ||  |||   ||  | || ||| ||  |  |    || |     || |  || |   |   | || ||| |   |                                                       
AGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcct-ttactctcttttcctaggatacctgagattatttg-taggatatttcacatgctttacttttactgttaatccttgtcaaactggtcaatttctctccctctctctagtgtcggcttgttgttgcatcatctaatatatggtttaatttttag

upper sequence: GRMZM2G132144_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA10G16090.1 (Glycine max), 5'ss of exon 4
AGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCACTGATCTGTTCTTCCAGGACAGgtctgtct----gttacaatctcaatatttgtcatttgctgacatgaaattacaatttgtaccattctggcaatagtag--------ttttgggagcagcattttattatca------------------------------------------------------------
|| | || | ||| ||||||||||||||||||  |||||||||||| ||||| ||||| ||||| ||||     || | ||||||||||   ||||||| || || ||      | |  ||| |  || | |||  ||||    |   |||   |||  |  | |  |   | | ||           | |    |   |  |||||| |                                                              
AGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgccttaccaatcctttcttaggatatttcacatgctttacttttattgttattcttgtcctcgtcaaactggtcaactgcttcctctctttgggtcgctttattgttgcatcttctaggcttagtatttgtaatgctgcttcatctatagatatgatgtaattttcag

upper sequence: GRMZM2G132144_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT3G57290.1 (Arabidopsis thaliana), 5'ss of exon 4
AGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCACTGATCTGTTCTTCCAGGACAGgtctgtctgttacaatct-caatatttgtcatttgctgaca--tgaaattacaatttgtaccattctggcaatagtagttttgggagcagcattttattatca
|| | ||||||||||| ||| |||||||||||| |||||  ||||| ||||||||||| ||||| || |    ||||| |||||| ||   ||| |||| ||  | || |  |  |||   || |   ||  ||  | | |  |   || || || | |  | ||  |    ||  |       || |   ||   || |   
AGGTGCAGAACAGGATTTGGTTGATGCATTGGGGTCTGTATATCTTTTTTAACCATGATAATGGAAGGACACAGATCATTGATCTTTTTAACCAAGACAAgtaagcctctacctctctgttatctgcatctcttctttatacctttcatcaccatctatttccttgcgttt-taagataagcatgatctagatgcgatgaa--