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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTGCAATAGCTTACACAATGTTGTCTGGGGAAGGGCAGTTTTACACATACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaattgaatatttttttcttcttgaagttaattcttaatcatcgacactatttgattcgaatgtactgttcttttcttctaag

Basic information

species Zea mays
transcript GRMZM2G132084_T04
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132084_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g46410.1 (Oryza sativa), 5'ss of exon 6
TGGTTGCAATAGCTTACACAATGTTGTCTGGGGAAGGGCAGTTTTACACATACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaag-aaattgaatatttttttcttcttgaagttaattcttaatcatcgacactatttgattcgaatgtactgttctt-----ttcttctaag
| |||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||| || ||||  || |||   |||||| |   | |  ||  |||||     |||||| ||  ||  | ||| |  |     || || ||||
TAGTTGCAATAGCTTACACAATGTTGTCAGGGGAGGGTCAGTTCTACACATACATGGTTCTTATTTCAGAAACAACCACCCCTGAAATTAACTTGAGATGgtaagcaagttgagcatgtttcatttcttgtatgaagtcatt--tcatctcagttatttggttataacattctgatgctcggatttattttaag

upper sequence: GRMZM2G132084_T04 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA02G45240.3 (Glycine max), 5'ss of exon 6
TGGTTGCAATAGCTTACACAATGTTGTCTGGGGAAGGGCAGTTTTACACATACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaa----gaaattgaatattt-ttttcttcttgaagttaattcttaatcatcg-acactatttgattcgaatgtactgttcttttcttctaag
| || ||| || | |   |||||||| ||||||| || ||| | |||||||||||||| || || || |||||||| || ||||  ||||||||| ||||||||    | | || |||||    | | |   | | || | || || || |  | |||   | || ||   | |                    
TAGTAGCAGTATCATTTTCAATGTTGACTGGGGAGGGTCAGCTATACACATACATGGTCCTGATCTCTGAGACAACTACTCCTGGGATCAACTTGAGATGgtaatcttgcacttaaatatgcactctataggtcatgtaatttatttattaatgcacatattgtgtttgtgaag--------------------

upper sequence: GRMZM2G132084_T04 (Zea mays), 5'ss of exon 7
lower sequence: Vv12s0028g01000.t01 (Vitis vinifera), 5'ss of exon 5
TGGTTGCAATAGCTTACACAATGTTGTCTGGGGAAGGGCAGTTTTACACATACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaa--attgaatatttttttcttcttgaagttaattcttaatcatcgacactatttgattcgaatgtactgttcttttcttctaag
| | |||| | || ||  |||||||| |||||||||||||  ||||||| ||||||||||| || || |||||||| ||||| |  ||||| ||| |||||||| |   |   ||||   |    |    |   ||| ||||      ||     | ||||||| | |  |   |||  |          
TAGCTGCAGTGGCATATGCAATGTTGACTGGGGAAGGGCAACTTTACACCTACATGGTTCTTATCTCTGAGACAACAACCCCAGGGATCAATTTGAGATGgtaacacccaactaataaaatgagttgacaggttttagttctgctctctc----ttttttgatttgcaacttgggtttgtaag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166452447|gb|EG305289.1|EG305289
EST:     AACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGC
genomic: -ACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaatt ... ttcttctaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGC
EST: gi|78076716|gb|DV505150.1|DV505150
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaatt ... ttcttctaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|211111684|gb|FL466622.1|FL466622
EST:     ATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: ATCAACTTGCGATGgtaagaaatt ... ttcttctaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|166625864|gb|EG208558.1|EG208558
EST:     GAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTTACTTGGTTAATG
genomic: GAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaatt ... ttcttctaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTT-ACTTGGTTAATG