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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCCTATCTTGGAAACTATACAAAAGTATCTTTGGCCTCGCCTTTGTAAACTCGATCAGCAGACACTgtgagttacaaaaaaaacttcaaagtgtgaataatatttgtttttgcgaattaatgtgaattgcatttgcatatcatgcataaataagttccacaagtaataattactaatattatcacatttttcacag

Basic information

species Zea mays
transcript GRMZM2G131756_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131756_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os05g37350.1 (Oryza sativa), 5'ss of exon 10
ATATCCTATCTTGGAAACTATACAAAAGTATCTTTGGCCTCGCCTTTGTAAACTCGATCAGCAGACACTgtgagttacaaaaaaaacttcaaagtgtgaataatatttgtttttgcgaattaatgtgaattgcatttgcatatcatgcataaataagttccacaagtaataa-ttactaatattatcacatttttcacag
||| ||| ||||||| |||||||||||||| || |||||||| || |||||||| ||||| || ||||||||||||| ||  ||     || |     | | ||| |||   || |  |||| | |   ||   |  |||   | | | ||  ||  ||    || |  ||  |||                        
ATACCCTGTCTTGGAGACTATACAAAAGTACCTCTGGCCTCGTCTGTGTAAACTTGATCAACAAACACTgtgagttataaccaattaaccataccc--actcatagttgccctt-cttattagttt---ttttttacgcaagcccttcttat-tagtttgtgtaacttctaggtta------------------------

upper sequence: GRMZM2G131756_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os05g37410.1 (Oryza sativa), 5'ss of exon 11
ATATCCTATCTTGGAAACTATACAAAAGTATCTTTGGCCTCGCCTTTGTAAACTCGATCAGCAGACACTgtgagttacaaaaaaaacttca-aagtgtgaataata--tttgtttttgcgaattaatgtgaattgcatttgcatatcatgcataaataagttccacaagtaataattactaata-ttatcacatttttcacag--------------------------------------------------------
||| ||| ||||||| |||||||||||||| || |||||||| || |||||||| ||||| || ||||||||||||| ||  ||     || |       ||| |     | |||||   | ||  ||| | ||  |  |  || || |    |   || || ||  | |   ||| |  |||| |||   || |    |                                                           
ATACCCTGTCTTGGAGACTATACAAAAGTACCTCTGGCCTCGTCTGTGTAAACTTGATCAACAAACACTgtgagttataaccaattaaccatacccactcatagttgccctttttttattagtttgtgtaatttctaggt-tatttcttttccaggcaaattacagtatttggaatcatgaataattaaggcaataaggagtaaataacataatttataactataaggaattattaacagagtttcatggttttcacag