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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGATATATCCAAGTGATGGTTTACTGCCTATTTACATAAATCCTCATTCTGGGACAGCATCATACTCAACTATCACATTTGGTGCTATGGGAGACAGgtaatgtcattgtcttctccgcatttttgtttctttttaagtgttttgtgtcatcattctttag

Basic information

species Zea mays
transcript GRMZM2G130889_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130889_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g51690.1 (Oryza sativa), 5'ss of exon 8
AAAAGATATATCCAAGTGATGGTTTACTGCCTATTTACATAAATCCTCATTCTGGGACAGCATCATACTCAACTATCACATTTGGTGCTATGGGAGACAGgtaatgtcattgtcttctcc-------gcatttttgtttctttttaagtgttttgtgtcatcattctttag-------------------------------
| |||||||| ||||| ||||| ||||| ||||| |||||||| |||||||| || || || || |||||||| || ||||||||||| |||||||| |||| ||     | |  || |         ||   |  || |||  | |     | |||   || |||| |                                 
AGAAGATATACCCAAGCGATGGCTTACTCCCTATATACATAAACCCTCATTCAGGAACTGCGTCGTACTCAACAATTACATTTGGTGCAATGGGAGATAGgttatacttctattctcacttattcaaacaagctatttccttcctgaaaacatagtg--gtccttctgtgattaacattagtactttccatgttaatttgtg