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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGTTACCTTATGCTGGAAAGCTGTGGCGGCTCTCTTTATCCTTCTAGGGATTTTCCTGATACTAAACAGgtataacatttacttgatctaccttttgctgtgatttggatatgttcagagtgtcacgactaaaatcacgtacactcagggtgtcattcttgtcgagctt...

Basic information

species Zea mays
transcript GRMZM2G130868_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130868_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g03110.1 (Oryza sativa), 5'ss of exon 7
ATTTGTTACCTTATGCTGGAAAGCTGTGGCGGCTCTCTTTATCCTTCTAGGGATTTTCCTGATACTAAACAGgtat-aacatttacttgatctaccttttgctgtgatttggatatgttcagagtgtcacgactaaaatcacgtacactcagggtgtcattcttg-tcgagctt
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ATTTGTTACCTTATGCTGGACAGTAGTGGCAACTCTCTTCATTCTTCTAGGGATTTTCCTGATATTGAACAGgtattattaggttacgaatagccttctttccatgcgaaataattctaggaggtcttacaattctaattttctcc--ttggtatggaaccatgaatcaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16925628|gb|BM078696.1|BM078696
EST:     GCTGTGGCGGCTCTCTTTATCCTTCTAGGGATTTTCCTGATACTAAACAG                         CGCTGCGCAGGATACCTGCGAAGCAATGGACCAGTGGGCCCAGCACCCTCA
genomic: GCTGTGGCGGCTCTCTTTATCCTTCTAGGGATTTTCCTGATACTAAACAGgtataacatt ... ctggcaacagCGCTGCGCAGGATACCTGCGAAGCAATGGACCAGTGGGCCCAGCACCCTCA
EST: gi|22490536|gb|BU050459.1|BU050459
EST:     GCTGTGGCGGCTCTCTTTATCCTTCTAGGCATTTTCCTGATACTAAACAG                         CGCTGCGCAGGATACCTGCGAAGCAATGGACCAGTGGGCCCAGCACCCTCA
genomic: GCTGTGGCGGCTCTCTTTATCCTTCTAGGGATTTTCCTGATACTAAACAGgtataacatt ... ctggcaacagCGCTGCGCAGGATACCTGCGAAGCAATGGACCAGTGGGCCCAGCACCCTCA
EST: gi|33100423|gb|CF060383.1|CF060383
EST:     GCTGTGGCGGCTCTCTTTATCCTTCTAGGGATTTTCCTGATACTAAACAG                         CGCTGCGCAGGATACCTGCGAAGCAAAAGACCAGTGGGCCCAGCACCCTCA
genomic: GCTGTGGCGGCTCTCTTTATCCTTCTAGGGATTTTCCTGATACTAAACAGgtataacatt ... ctggcaacagCGCTGCGCAGGATACCTGCGAAGCAATGGACCAGTGGGCCCAGCACCCTCA
EST: gi|87153175|gb|DY397964.1|DY397964
EST:     GCTGTGGCGGCTCTCTTTATCCTTCTAGGCATTTTCCTGATACTAAACAG                         CGCTGCGCAGGATACCTGCGAAGCAATGGACCAGTGGGCCCAGCACCCTCA
genomic: GCTGTGGCGGCTCTCTTTATCCTTCTAGGGATTTTCCTGATACTAAACAGgtataacatt ... ctggcaacagCGCTGCGCAGGATACCTGCGAAGCAATGGACCAGTGGGCCCAGCACCCTCA
EST: gi|211182625|gb|FK950421.1|FK950421
EST:     GCTGTGGCGNCTCTCTTTATCCTTCTAGGGATTTTCCTGATACTAAACAG                         CGCTGCGCAGGATACCTGCGAAS-AATGGACCAGTGGGCCCAGCACCCTCA
genomic: GCTGTGGCGGCTCTCTTTATCCTTCTAGGGATTTTCCTGATACTAAACAGgtataacatt ... ctggcaacagCGCTGCGCAGGATACCTGCGAAGCAATGGACCAGTGGGCCCAGCACCCTCA