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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATAATGAACTGACCGCGGCTGGCATAGATAATTTACAAGCTCCAACTCTTGGGAGTCTAACATACTTCATGATGGCTCCGACACTCTGTTATCAGgtaattttccgatcatgtatgttgatctaaagcagatatatgattttttttattacctttcgactggccatttctgattagcagcagaaagtgtgctggcaaggtgaaacattttagaaacgtactacttttgttttgcatgcag

Basic information

species Zea mays
transcript GRMZM2G130749_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130749_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os05g10810.1 (Oryza sativa), 5'ss of exon 7
GTTGATAATGAACTGACCGCGGCTGGCATAGATAATTTACAAGCTCCAACTCTTGGGAGTCTAACATACTTCATGATGGCTCCGACACTCTGTTATCAGgtaattttccgatcatgtatgttgatctaaagcagatatatgattttttttattacctttcgactggccatttctgattagcagcagaaagtgtgctggcaaggtgaaacattttagaaacgtactacttttgttttgcatgcag
|||||||||||||| | | | | || ||| |||||||||||| |||||||| | |||| ||||| |||||||||||||||||| |||||||||||||||||| ||||  | ||||  |  |   |||   |||  |  || | |||   | | | | | | |    |   ||||||   |  |  |    | |  |||  | |  || ||                                  
GTTGATAATGAACTAAGCACAGTTGACATGGATAATTTACAACCTCCAACTTTAGGGAATCTAATATACTTCATGATGGCTCCTACACTCTGTTATCAGgtattttttgggtcattcac-tcattct---gcatgttgataactttcagt-taatcatgcaa---acatgttctgaaaggtggtggttcttat--tgg--atgcaaaccac---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149108049|gb|EE292403.2|EE292403
EST:     CTCTTGGGAGTCTAACATACTTCATGATGGCTCCGACACTCTGTTATCAG                         CCAAGTTATCCTCGAACACCTTATGTTAGAAAAGGTTGGCTGGTCCGTCAA
genomic: CTCTTGGGAGTCTAACATACTTCATGATGGCTCCGACACTCTGTTATCAGgtaattttcc ... ttgcatgcagCCAAGTTATCCTCGAACACCTTATGTTAGAAAAGGTTGGCTGGTCCGTCAA
EST: gi|88756047|gb|DY540188.1|DY540188
EST:     CTCTTGGGAGTCTAACATACTTCATGATGGCTCCGACACTCTGTTATCAG                         CCAAGTTATCCTCGAACACCTTATGTTAGAAAAGGTTGGCTGGTCCGTCAA
genomic: CTCTTGGGAGTCTAACATACTTCATGATGGCTCCGACACTCTGTTATCAGgtaattttcc ... ttgcatgcagCCAAGTTATCCTCGAACACCTTATGTTAGAAAAGGTTGGCTGGTCCGTCAA