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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTGTACAGGTTTTGTCTCGCTCACACCTCAAAATGCGAGTCTGGGAACGTGGTGCTGgtatgattaatcttcccttaacatcctttaactgtagcatatgccattgcttgaatcttagaatgtcttctcttttgttgcctcctgcatctagattttt...

Basic information

species Zea mays
transcript GRMZM2G130332_T04
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130332_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g37960.1 (Oryza sativa), 5'ss of exon 7
AGTTTGTACAGGTTTTGTCTCGCTCACACCTCAAAATGCGAGTCTGGGAACGTGGTGCTGgtatgattaatcttcccttaa-catcctttaactgtagcatatgc-cattgcttgaatcttagaatgtcttctcttttgttgcctcctgcatctagattttt-
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AATTTGTAGAGGTCCTGTCTCGCTCACACCTCAAAATGAGAGTCTGGGAGCGTGGTGCTGgta--actgatgttcccttaatcttgatttttataggatatatgcactgtggtttaatttcagcatgt-tcctttttttttcatgcatatatctttgtctgtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24773782|gb|CA409036.1|CA409036
EST:     GGTTTTGTCTCGCTCACACCTCAAAATGCGAGTCTGGGAACGTGGTGCTG                         GAGCAACTCTTGCCTGTGGTACTGGTGCTTGTGCGGTGGTTGTTGCAGCTG
genomic: GGTTTTGTCTCGCTCACACCTCAAAATGCGAGTCTGGGAACGTGGTGCTGgtatgattaa ... ttgactgtagGAGCAACTCTTACCTGTGGTACTGGTGCTTGTGCGGTGGTTGTTGCAGCTG
EST: gi|211026296|gb|FL344450.1|FL344450
EST:     GGTTTTGTCTCGCTCACACCTCAAAATGCGAGTCTGGGAACGTGGTGCTG                         GAGCAACTCTTGCCTGTGGTACTGGTGCTTGTGCGGTGGTTGTTGCAGCTG
genomic: GGTTTTGTCTCGCTCACACCTCAAAATGCGAGTCTGGGAACGTGGTGCTGgtatgattaa ... ttgactgtagGAGCAACTCTTACCTGTGGTACTGGTGCTTGTGCGGTGGTTGTTGCAGCTG