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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatcttttgtatttggtagctagcagttgggaacttcattttgctggtataagctctatgcacataaattgcagtccctttatcattcaagaatgt...

Basic information

species Zea mays
transcript GRMZM2G130230_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130230_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g40874.1 (Oryza sativa), 5'ss of exon 7
CTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatcttttgtatttggtagctagcagttgggaacttc---attttgctggtataagctctatgcacataaattgcagtccctttatcattcaagaatgt
||||| ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |  |   || ||||||  ||||||| || |||||     || || |   | |||  | |     ||||| ||||||   |  |||||  |  |    
CTTGTGCTTCGTTTTGCCAACCGCTTGTTCTTGCCTCTTTGGAACCGTGACAATATTGATAATATACAGgtaagctggtcaatagttggtacttagcagtaggcaacttataggttatgattcaagaagtccaacttttataaactgcagttaatgcatcatgtagaag---

upper sequence: GRMZM2G130230_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA16G06850.1 (Glycine max), 5'ss of exon 7
CTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatcttttgtatttggtagctagcagttgggaacttcattttgctggtataagctctatgcacat-aaattgcagtccct-ttatcattcaagaatgt
 | || ||||| ||||| || || || |||||||| ||||||||||||||||| ||||| ||  ||||||| ||   ||||   | |   || || ||  |  |   |  |  || ||   |     | ||| ||  | |||||   |    | || |   | |||  |  
TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggatttttaattgtcaaagtta-caactttgggttaaaagttacttaaacttcatttattcaattgaaattagggaaggtattgttggttaagcttt-

upper sequence: GRMZM2G130230_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA19G22690.1 (Glycine max), 5'ss of exon 7
CTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatcttttgtatttg--gtagcta--gcagttgg-gaacttcattttgctggtataagctctatgcacataaattgcagtccctttatcattcaagaatgt
 | || ||||||||||| |||||||||||| ||||||| |||||||| ||||| |||| |||| | ||||| |||   | ||        ||  |||  | |||     |||      ||  | ||    |||  |   |   | ||| ||     |   ||||  ||      
TTAGTACTTCGTTTTGCAAACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAGgtgagaaagtgtgctgccaaagttactactgaagtcatcaaacaaggccttattagt--tggcttgacaaattcatatttcataatttgcctcatctaactg---

upper sequence: GRMZM2G130230_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA19G24250.1 (Glycine max), 5'ss of exon 7
CTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatcttttgtatttggtagctagcagttgggaacttcattttgctggtataagctctatgcacataaattgcagtcc--ctttatcattcaagaatgt
 | || ||||| ||||| || || || |||||||| ||||||||||||||||| ||||| ||| ||||||| |||  ||||   | |   || ||  | || ||   |     || ||   |     | |||  | || || |   |     |  | |   |  ||  |  
TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAATGTACAGgtgagaatttttaattgtcaaagttaaaactttggg-ttaagagttacttaaacttcatttatttaaatgaagtaagggaaggcactgttggttgagcttt-

upper sequence: GRMZM2G130230_T03 (Zea mays), 5'ss of exon 7
lower sequence: AT3G27300.1 (Arabidopsis thaliana), 5'ss of exon 7
CTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatcttttgtatttggtagctagcagttgggaacttcattttgctggtataagctctatgcacataaattgcagtccctttatcattcaagaatgt
 | |||||||| |||||||| || || || ||||| || |||||||||||||||||||  ||  ||||||| |||  ||      || | | | |  | ||   |||||   ||   | |  |    || || |||||||||  |       || |             
TTGGTTCTTCGGTTTGCCAATCGCTTGTTTTTGCCACTATGGAACCGCGACAATATTGCAAACGTACAGgtgagagtttgatcgcttagca-caaatatttctaaactt---ttgtatagagttgaatccatccacataaatctctaatttctttttgcag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71449499|gb|DR830549.1|DR830549
EST:     CCGATTATTCTTGCCTCTTTGGGACCGCGACAATATTGAATA-TATACAG                         ATTGTATTCAGGGAAGACTTTGGTAC
genomic: CCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGA-TAATATACAGgtaagatctt ... tacactgcagATTGTATTCAGGGAAGACTTTGGTAC
EST: gi|67037531|gb|CO464345.1|CO464345
EST:     ACCGATTGTTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAG                         ATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGAC
genomic: ACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatctt ... tacactgcagATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGAC
EST: gi|78083439|gb|DV511832.1|DV511832
EST:     ACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAG                         ATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGA
genomic: ACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatctt ... tacactgcagATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGA
EST: gi|6194863|gb|AW146967.1|AW146967
EST:     ACAATATTGATAATATACAG                         ATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGAC
genomic: ACAATATTGATAATATACAGgtaagatctt ... tacactgcagATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGAC
EST: gi|71447340|gb|DR828390.1|DR828390
EST:     ACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAG                         ATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGAC
genomic: ACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatctt ... tacactgcagATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGAC
EST: gi|89759526|gb|DY688327.1|DY688327
EST:     ACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAG                         ATTGTATTCAGGGAAGACTTTGGTACTGAA
genomic: ACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatctt ... tacactgcagATTGTATTCAGGGAAGACTTTGGTACTGAA
EST: gi|78109778|gb|DV528194.1|DV528194
EST:     ACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAG                         ATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGAC
genomic: ACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatctt ... tacactgcagATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGAC