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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTGAACTTGACTACCTTGTCATCGATATGCCTCCTGGAACAGGCGACATACACTTAACACTCTGTCAGgtgctaccaccagcctctgtgctgtacaaatcgtatgtagtaacatcaaatactccttcaaagcattgcgaaatataacgtctgaaatatcag

Basic information

species Zea mays
transcript GRMZM2G129208_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G129208_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g52170.1 (Oryza sativa), 5'ss of exon 8
GGGTGAACTTGACTACCTTGTCATCGATATGCCTCCTGGAACAGGCGACATACACTTAACACTCTGTCAGgtgctaccaccagcctctgtgctgtacaaatcgtatgtagtaacatcaaatactccttcaaagcattgcgaaatataac--gtctgaaatatcag
||| ||||| |||||||||||||| || |||||||| |||||||| || |||||||||||||||||||||||| |||| | |||||  ||  ||||||||||  | || ||||||||||  | | |||  | ||| || ||||| ||||  |||||||| |||||
GGGCGAACTCGACTACCTTGTCATTGACATGCCTCCAGGAACAGGAGATATACACTTAACACTCTGTCAGgtggtacctctagcctgagtattgtacaaatcacacgtggtaacatcaacca-tgcttgtaggcactgtgaaatttaacatgtctgaaacatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32921765|gb|CF026577.1|CF026577
EST:     AGGCGACATACACTTAACACTCTGTCAG                         GTGGCTCCATTGACTGCAGCAGTGATTGTTACCACCCCTCAAAAGCTGGCT
genomic: AGGCGACATACACTTAACACTCTGTCAGgtgctaccac ... gaaatatcagGTGGCTCCATTGACTGCAGCAGTGATTGTTACCACCCCTCAAAAGCTGGCT
EST: gi|32920197|gb|CF025009.1|CF025009
EST:     TCATCGATATGCCTCCTGGAACAGGCGACATACACTTAACACTCTGTCAG                         GTGGCTCCATTGACTGCAGCAGTGATTGTTACCACCCCTCAAAAGCTGGCT
genomic: TCATCGATATGCCTCCTGGAACAGGCGACATACACTTAACACTCTGTCAGgtgctaccac ... gaaatatcagGTGGCTCCATTGACTGCAGCAGTGATTGTTACCACCCCTCAAAAGCTGGCT