1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TGTCTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTTCTATGGGGAAAATAAGTTACATTGCACCAGCTGGTCAGTACAACCTTCAGgttagttgatgttatgccttatagaaagtcttattgatgtagtgtcttctacctctgagctttaatctcaatccttgctattgcttttttatgcag
species | Zea mays |
transcript | GRMZM2G128877_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGTCAGTACAACCTTCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAATTTTACCATGEST: gi|211154399|gb|FL123518.1|FL123518
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGTCAGTACAACCTTCAGgttagttgat ... ttttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAATTTTACCATG
EST: TGGGGGAAAAATA-GT-ACATTGCACCAGCTGGTCAGTANCA-CCTTCAG GACACAGTGCTAGAATTGGAANTTCAGGNCATAAAAAAGAATTTTACCATGEST: gi|149014926|gb|EE044655.2|EE044655
genomic: TGGGG-AAAA-TAAGTTACATTGCACCAGCTGGTCAGTA-CAACCTTCAGgttagttgat ... ttttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAATTTTACCATG
EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGTCAGTACAACCTTCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAATTTTACCATG
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGTCAGTACAACCTTCAGgttagttgat ... ttttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAATTTTACCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTTCTATGGGGAAAATAAGTTACATTGCACCAGCTGGTCAGTACAACCTTCAGgttagttgatgttatgccttatagaaagtcttattgatgtagtgtcttctacctctgagctttaatctcaatccttgctattgcttttttatgcag
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