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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAAAAGATATACTTATGCGTGTTGTGTCACAAAATATTTCCCCTGAGTTGACTCTAGTAGAAAAGgtattccattatatttacatttttgtttttcttattgtctaagttgcccagttgcttttacgctacctttgttcatcacttcattataacattttcag

Basic information

species Zea mays
transcript GRMZM2G126656_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126656_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g07190.1 (Oryza sativa), 5'ss of exon 7
CTCAAAAGATATACTTATGCGTGTTGTGTCACAAAATATTTCCCCTGAGTTGACTCTAGTAGAAAAGgtat-tccattatatttacatttttgtttttct-----tattgtctaag--ttgcccagttgcttttacgctacctttgttcatcacttcattataacattttcag
|||||| ||| | ||||||||||||||  |||| ||| |||| ||||| ||||| |||||||||||||| | ||||  | |||||||||||  |   |||     |    ||| ||  |||   | |||| | |   ||  || ||||  |   ||||  || |  |||  ||
CTCAAAGGATTTGCTTATGCGTGTTGTTGCACAGAATCTTTCTCCTGAATTGACCCTAGTAGAAAAGgtttctccaccagatttacattttcttgcctcttccgatgccatctgagctttgtttaattgcatatgaactcactgtgttact---ttca--attatttttgaag

upper sequence: GRMZM2G126656_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA05G32930.1 (Glycine max), 5'ss of exon 7
CTCAAAAGATATACTTATGCGTGTTGTGTCACAAAATATTTCCCCTGAGTTGACTCTAGTAGAAAAGgtattccattatatttacatttttgtttttctta--ttgtctaagttgcccagttgcttttacgctacctttgttcatc-acttcattataacattttcag-----------------------------------------------------
 ||||| || ||||| |||||||||||| | |||||| |||| |||||||||||||| || |||||||| |   |||   |||  || |||||||||   |  |    | ||| |       |   ||  |  |  |   ||| |    ||  || | |  ||||                                                        
TTCAAAGGACATACTAATGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAGgt-tgttatttctttttaatatttgttttttggaagtgacatgagtggaaagagggtcattgtgagaggtcctttcttttgtttggttctgattttttgctaagtattcagaactgagttgattttctacttgattcttccctttctcacgtag

upper sequence: GRMZM2G126656_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 7
CTCAAAAGATATACTTATGCGTGTTGTGTCACAAAATATTTCCCCTGAGTTGACTCTAGTAGAAAAGgt-attccattatatttacatttttgtttttcttattgtctaagttgcccagttgcttttacgctacctttgttcatcacttcattataacattttcag-----------------------------------------------------
 ||||| || ||||| |||||||||||| | |||||| |||| |||||||||||||| || ||||||||  ||   | || || | |||| | ||||     |    | ||| |       |   ||  |  |    | |   |   ||  || | |  ||||                                                        
TTCAAAGGACATACTAATGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAGgttgttatttcattttaatatttattttttggaagtgacttgagtggaaagagggtcgttgtgagaggcctttcttttgtttggttctgattttttgctaaatattcagaactgagttgattttcttcttgattcttccctttctaatgtag

upper sequence: GRMZM2G126656_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 7
CTCAAAAGATATACTTATGCGTGTTGTGTCACAAAATATTTCCCCTGAGTTGACTCTAGTAGAAAAGgtattccattatatttacatttttgtttttcttattgtctaagttgcccagttgcttttacgctacctttgttcatcacttcattataacattttcag---------
 ||||| ||||| |||||||| |||||| |||||||  |||| |||||||||||||| || |||||||| |    || |      | | |||| |  || ||  |      ||   |  ||  | |    |   |   |  | | | | |||   |   |||||          
TTCAAAGGATATTCTTATGCGGGTTGTGGCACAAAACCTTTCTCCTGAGTTGACTCTGGTGGAAAAGgt-tgttgttgtgaaactactgttgtataactgatcat------tgtttatatgtatgtgttttgaatgcatatagcccattattgagaatatttcataatgcctga