Sequence
atgc intronic sequence ATGC exonic sequenceGAAAATCCTTACCTCTTCAATGGCGATTTTGTGGACCGAGGATCTTTCTCCGTTGAAGTCATACTCACCCTTTTTGCTTTCAAGTGCCTCTACCCAAAAGgtattctcacattttgttgactccatgaactggacaacattctgcagtttgtttcctctttcgaaaggtgcaggagtgcttcatgtttcataaaaaaaag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G126435_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os05g11550.1 (Oryza sativa), 5'ss of exon 8
GAAAATCCTTACCTCTTCAATGGCGATTTTGTGGACCGAGGATCTTTCTCCGTTGAAGTCATACTCACCCTTTTTGCTTTCAAGTGCCTCTACCCAAAAGgtattctcacattttgttgactc-catgaactggacaacattctgcagtttgtttcctctttcgaaaggtgcaggagtgcttcatgtttcataaaaaaaag----------------------------------------------------------
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GAGAATCCTTACCTCTTCAATGGAGACTTTGTAGACAGAGGATCTTTTTCTGTTGAAGTCATACTCACTCTTTTTGCTTTCAAGTGCCTCTATCCGACAGgtaactgctagttttgatacttttcatgaactagatattagtatgcaatctgttactttactagctcttttattacattattc-taacttataatagatgtatcgattttagttgttcatgtaataaggtttcctttatacataccttgaatgatccag
upper sequence: GRMZM2G126435_T02 (Zea mays), 5'ss of exon 7
lower sequence: AT2G42810.1 (Arabidopsis thaliana), 5'ss of exon 8
GAAAATCCTTACCTCTTCAATGGCGATTTTGTGGACCGAGGATCTTTCTCCGTTGAAGTCATACTCACCCTTTTTGCTTTCAAGTGCCTCTACCCAAAAGgta----ttctcacattttgttg-----actccatgaactggacaacattctgcagtttgtttcctctttcgaaaggtgcaggagtgcttcatgtttcataaaa--aaaag-----------------------------------------------
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GAGAACCCATACCTATTTAATGGCGACTTTGTGGACAGAGGCTCATTCTCCGTTGAGATCATCCTCACTTTGTTTGCTTTCAAGTGCATGTGCCCATCATgtaagttctctaaaactttgttgtaataattctttgatgttcatgttttaattgcttttgctatcactggcaaggattaaattatttactattgtctgatggggttaaaagtttccattttaattgtaaatcgccatttacacacctttgtactgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|61118887|gb|DN559848.1|DN559848EST: CGTTGAAGTCATACTCACCCTTTTTGCTTTCAAGTGCCTCTACCCAAAAG CTATGTACCTTGCAAGAGGAAATCATGAAAGCAAGAGCATGAACAAAATAT
genomic: CGTTGAAGTCATACTCACCCTTTTTGCTTTCAAGTGCCTCTACCCAAAAGgtattctcac ... aattttccagCTATGTACCTTGCAAGAGGAAATCATGAAAGCAAGAGCATGAACAAAATAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAATCCTTACCTCTTCAATGGCGATTTTGTGGACCGAGGATCTTTCTCCGTTGAAGTCATACTCACCCTTTTTGCTTTCAAGTGCCTCTACCCAAAAGgtattctcacattttgttgactccatgaactggacaacattctgcagtttgtttcctctttcgaaaggtgcaggagtgcttcatgtttcataaaaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG