1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTCCCTGCATCACATTGATAGAGACCTCCTCGGATGGTGGCTCTGTGAGCGCCAGTGTAAAGACGGAGGACTTAATGGGCGGCCTGAGAAACTAGCTGATgtgaggtttactctgtcacaagtcatgcgtggtctgcattcttcagtacatgtttccacgagcccgctatggatttaattgaaccctaccaaattctcaag
species | Zea mays |
transcript | GRMZM2G124557_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCCAGTGTAAAGACGGAGGACTTAATGGGCGGCCTGAGAAACTAGCTGAT GTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTGEST: gi|89250321|gb|DY622107.1|DY622107
genomic: GCCAGTGTAAAGACGGAGGACTTAATGGGCGGCCTGAGAAACTAGCTGATgtgaggttta ... aattctcaagGTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTG
EST: ATGGGCGGCCTGAGAAACTAGCTGAT GTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTGEST: gi|88752275|gb|DY536416.1|DY536416
genomic: ATGGGCGGCCTGAGAAACTAGCTGATgtgaggttta ... aattctcaagGTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTG
EST: GCCAGTGTAAAGACGGAGGACTTAATGGGCGGCCTGAGAAACTAGCTGAT GTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTGEST: gi|74240224|gb|DT648138.1|DT648138
genomic: GCCAGTGTAAAGACGGAGGACTTAATGGGCGGCCTGAGAAACTAGCTGATgtgaggttta ... aattctcaagGTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTG
EST: GCCAGTGTAAAGACGGAGGACTTAATGGGCGGCCTGAGAAACTAGCTGAT GTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTGEST: gi|71767372|gb|DR965309.1|DR965309
genomic: GCCAGTGTAAAGACGGAGGACTTAATGGGCGGCCTGAGAAACTAGCTGATgtgaggttta ... aattctcaagGTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTG
EST: GCCAGTGTAAAGACGGAGGACTTAATGGGCGGCCTGAGAAACTAGCTGAT GTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTGEST: gi|78080906|gb|DV509318.1|DV509318
genomic: GCCAGTGTAAAGACGGAGGACTTAATGGGCGGCCTGAGAAACTAGCTGATgtgaggttta ... aattctcaagGTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTG
EST: GCCAGGGTAAAGACGAAGGACTTAATGGGCGGCCTGAGAAACTAGCTGAT GTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTGEST: gi|211265936|gb|FL477028.1|FL477028
genomic: GCCAGTGTAAAGACGGAGGACTTAATGGGCGGCCTGAGAAACTAGCTGATgtgaggttta ... aattctcaagGTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTG
EST: ATGGGCGGCCTGAGAAACTAGCTGAT GTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTGEST: gi|71443998|gb|DR825048.1|DR825048
genomic: ATGGGCGGCCTGAGAAACTAGCTGATgtgaggttta ... aattctcaagGTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTG
EST: AGTGTAAAGACGGAGGACTTAATGGGCGGCCTGAGAAACTAGCTGAT GTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTG
genomic: AGTGTAAAGACGGAGGACTTAATGGGCGGCCTGAGAAACTAGCTGATgtgaggttta ... aattctcaagGTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCCTGCATCACATTGATAGAGACCTCCTCGGATGGTGGCTCTGTGAGCGCCAGTGTAAAGACGGAGGACTTAATGGGCGGCCTGAGAAACTAGCTGATgtgaggtttactctgtcacaagtcatgcgtggtctgcattcttcagtacatgtttccacgagcccgctatggatttaattgaaccctaccaaattctcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT