Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctctttgtaggatcatggtgttagttagggttacagtttacggtagtgcatttaaatttacccccacaatgacctatatttccactcattttgt...

Basic information

species Zea mays
transcript GRMZM2G124091_T04
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124091_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g55974.3 (Oryza sativa), 5'ss of exon 1
----------------------------------------------AAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctctttgtaggatcatggtgtta--gttagggttacagtttacggtagtgcatttaaatttacccccac---aatgacctatatttccactcattttgt
                                              ||||| ||||| ||||||||||| |||||||| ||||| ||||||||||| ||||||||| |||   ||| ||||   | |||  ||||   |     |||    |     ||||||||| || | |||    | ||  |  |||   || |  |    
TGCCTTTATAAGCTAAGAATAATCTTGTGTTATCTTCTCTTTGCAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGgtttgtttctggatagaatcagtatcttaaagttaaaatgtatttttgtcatcacctatttaaatt-actctcactttgaggaaatgcattataacaccat----

upper sequence: GRMZM2G124091_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g55974.1 (Oryza sativa), 5'ss of exon 7
AAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctctttgtaggatcatggtgtta--gttagggttacagtttacggtagtgcatttaaatttacccccac---aatgacctatatttccactcattttgt
||||| ||||| ||||||||||| |||||||| ||||| ||||||||||| ||||||||| |||   ||| ||||   | |||  ||||   |     |||    |     ||||||||| || | |||    | ||  |  |||   || |  |    
AAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGgtttgtttctggatagaatcagtatcttaaagttaaaatgtatttttgtcatcacctatttaaatt-actctcactttgaggaaatgcattataacaccat----

upper sequence: GRMZM2G124091_T04 (Zea mays), 5'ss of exon 7
lower sequence: AT3G48540.1 (Arabidopsis thaliana), 5'ss of exon 7
AAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctctttgtaggatcatggtgttagttagggttacagtttacggtagtgcatttaaatttacccccacaatgacctatatttccactcattttgt-------------------------------------------------------------------------------------------------------
||  | ||||| || |||||||| |||||||||||||||||||||||| | ||||||||| ||| | ||  ||     || |   |    ||    |      ||    | |  | |   |    |   ||  | || | | ||   |    ||                                                                                                       
AAGCTTTATGTGACAATGTTCCCTTGCAATGAATGTGCCAAGATTATTTTACAGgtttgt-tctatataccattggcttgatttgtcaaatttggatccttaataagctactctagtaatctttta---tggtcaatgtcttcagctaagcagtcatataaaaaccaaatgttctagttagtccaattaaccaatttgatgcaagtagatcatcacaatcatatggacttttgtcatttcggttttctttcttgcag

upper sequence: GRMZM2G124091_T04 (Zea mays), 5'ss of exon 7
lower sequence: Vv17s0000g01370.t01 (Vitis vinifera), 5'ss of exon 7
AAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctctttgtaggatc-atggtgttagttagggttacagtttacggtagtgcatttaaatttacccccacaatgacctatatttccactcattttgt--
|   | ||||| |||||||| || ||||| |||||||||||||| || |||||||||  ||    |||    ||  | || |  |  |  || |   ||  |  |  |||| | || |   |      |||| | ||||  ||     ||       
AGGCTTTATGTGACCATGTTTCCTTGCAACGAATGTGCCAAGATAATCATTCAGgtt-atccaactgtcttctctgtagtatatgcgacagt-atgattatctttgatgcagt-aactgccctttggaaatgccatatacctcatagtatcaaaccc

upper sequence: GRMZM2G124091_T04 (Zea mays), 5'ss of exon 7
lower sequence: PP1S426_43V6.1 (Physcomitrella patens), 5'ss of exon 8
AAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctctttgta---ggatcatggtgttagttagggttacagtttac--ggtagtgcatttaaatttacccccacaatgacctatatttccactcattttgt
| | |||| || ||| | ||||| |||||||||||||||||||| |||||||||||  |  | |  |     ||||||   |   |||  |    ||| ||| |  |||  ||      ||||| |             | |     |  ||||     
AGACTGTACGTGACCCTCTTCCCTTGCAATGAATGTGCCAAGATAATTATTCAGgtaagcatatccggtcatggatcaaaataccagt-ggaagaacaattttctgggtgctggccaacaattttctttttttggattatttgagatcggtcata----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76912349|gb|DV164688.1|DV164688
EST:     TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG                         TCAGGCGTATCTGAGGTCATATATTTCGTTGNNNNNNNGATTGACAACTCA
genomic: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctct ... tttcttacagTCAGGCGTATCTGAGGTCATATATTTCGTTGAAAAAAAGATTGACAACTCA
EST: gi|76920705|gb|DV168281.1|DV168281
EST:     TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG                         TCAGGCGTATCTGAGGTCATATATTTCGTTGNNNNNNNGATTGACAACTCA
genomic: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctct ... tttcttacagTCAGGCGTATCTGAGGTCATATATTTCGTTGAAAAAAAGATTGACAACTCA
EST: gi|76920706|gb|DV168282.1|DV168282
EST:     TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG                         TCAGGCGTATCTGAGGTCATATATTTCGTTGNNNNNNNGATTGACAACTCA
genomic: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctct ... tttcttacagTCAGGCGTATCTGAGGTCATATATTTCGTTGAAAAAAAGATTGACAACTCA