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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgggacatggcattgctttgctttgccacccctgatatttgtcttcttccccatctagctcagtctgagagcctgcgtatgaaacaattgaag

Basic information

species Zea mays
transcript GRMZM2G123029_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G123029_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os05g04630.1 (Oryza sativa), 5'ss of exon 11
TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg-----gacatggcattgctttgctttgccacccctgatatttgtcttcttccccatctagc-tcagtctgagagcctgcgtatgaaaca-attgaag
||||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||  ||| | || || || || |||||||| ||||| | |         | ||| || | | | || |    | |  |     || |     |||  || | || | |       |   |  | |||||         ||
TACATCGTGAAACTGGAGCAAGGAGGGCAAACCGTCTGCATCAGCGGGTTCATGGCGTTCGACATACCTCCACCACGCGGTCCTCTTTGgtacgcagcataacttatatgccaatacctggcctcattatcattctgtcttctgaatctccaaatttcgcatgaactcacaaaattttgcatgaactttgccacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149100422|gb|EE186497.2|EE186497
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|78021643|gb|DV490030.1|DV490030
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|110208372|gb|EC890269.1|EC890269
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|14244924|gb|BG842862.2|BG842862
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|148999547|gb|EE036519.2|EE036519
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|211114340|gb|FL479352.1|FL479352
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|32913325|gb|CF018137.1|CF018137
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|7204603|gb|AW559186.1|AW559186
EST:     ATCAGTGGGTTCATGGCGTATGACCTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|149078277|gb|EE167036.2|EE167036
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTTTCTG                         GATTTTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|211417815|gb|FL246184.1|FL246184
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|194716863|gb|FK934022.1|FK934022
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|93012558|gb|EB638078.1|EB638078
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGTGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|13515812|gb|BG518088.1|BG518088
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|16927660|gb|BM080729.1|BM080729
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTATG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|211453148|gb|FL447178.1|FL447178
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|6827002|gb|AW330645.1|AW330645
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|32859335|gb|CD999016.1|CD999016
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|45567994|gb|CK985848.1|CK985848
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|78109241|gb|DV527657.1|DV527657
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCCCCGCCGCGTGGTCCTCTCTG                         GATTTTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTGGATTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|149097402|gb|EE183255.2|EE183255
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|40303709|gb|CK348096.1|CK348096
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|6993891|gb|AW453105.1|AW453105
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|148980773|gb|EE027343.2|EE027343
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTTTG                         GATTTTTGGGGACGTCTTCATGGGAGCTTACCCCACGGTGTTTGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|18180292|gb|BM381502.1|BM381502
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|211489971|gb|FL475496.1|FL475496
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|149066691|gb|EE286828.2|EE286828
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|110520668|gb|EE024852.1|EE024852
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTTTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|211453149|gb|FL447179.1|FL447179
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|211401889|gb|FL450336.1|FL450336
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|60358971|gb|DN225944.1|DN225944
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|6695716|gb|AW288794.1|AW288794
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|5510772|gb|AI857156.1|AI857156
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|91876727|gb|EB406684.1|EB406684
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|91876845|gb|EB406802.1|EB406802
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|110943954|gb|EE164111.1|EE164111
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|211505620|gb|FL458319.1|FL458319
EST:     ATCAGTGGGTTCATGGCGTATGACGTSCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|33104124|gb|CF064084.1|CF064084
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG                         GATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG
EST: gi|148987680|gb|EE031561.2|EE031561
EST:     ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTTTTTG                         GATTTTTGGGGACGTCTTCATGGGAGCTTACCACCCGGTGTTTGACTTCGG
genomic: ATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTGgtatgtatgg ... acaattgaagGATTCTTGGGGACGTCTTCATGGGAGCTTACCACACGGTGTTCGACTTCGG