1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGTGGAGGACTGGGTCAGGATCGGCAGCCCTGCCAAGAACAAGGTGAAGAAAGAGCACGCATCGGTGCCGTTCGATGACCAGTGCTCCATCCTGGAGAAGgtacgtaacgtaaacgcacgcacacacaccgaccgtatgaataatggattatatattattggtttcgctcatcaacgaacaaattcaaggatcatcatcgacctttaattgtgtgtgtgtgtttctgcag
species | Zea mays |
transcript | GRMZM2G121878_T06 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGAGCACGCATCGGTGCCGTTCGATGACCAGTGCTCCATCCTGGAGAAA GAGGCCGTGAACGTGTCGCTCCAGAACCTCEST: gi|148987702|gb|EE031590.2|EE031590
genomic: AAGAGCACGCATCGGTGCCGTTCGATGACCAGTGCTCCATCCTGGAGAAGgtacgtaacg ... gtttctgcagGAGGCCGTGAACGTGTCGCTCCAGAACCTC
EST: AAGAGCACGCATCGGTGCCGTTCGATGACCAGTGCTCCATCCTGGAGAAG GAGGCCGTGAACGTGTCGCTCCAGAACCTCAAGAGCTACCCCTTCGTCAAGEST: gi|78081617|gb|DV510029.1|DV510029
genomic: AAGAGCACGCATCGGTGCCGTTCGATGACCAGTGCTCCATCCTGGAGAAGgtacgtaacg ... gtttctgcagGAGGCCGTGAACGTGTCGCTCCAGAACCTCAAGAGCTACCCCTTCGTCAAG
EST: AAGAGCACGCATCGGTGCCGTTCGATGACCAGTGCTCCATCCTGGAGAAG GAGGCCGTGAACGTGTCGCTCCAGAACCTCAAGAGCTACCCCTEST: gi|148991465|gb|EE032974.2|EE032974
genomic: AAGAGCACGCATCGGTGCCGTTCGATGACCAGTGCTCCATCCTGGAGAAGgtacgtaacg ... gtttctgcagGAGGCCGTGAACGTGTCGCTCCAGAACCTCAAGAGCTACCCCT
EST: AAGAGCACGCATCGGTGCCGTTCGATGACCAGTGCTCCATCCTGGAGAAG GAGGCCGTGAACGTGTCGCTCCAGAACCTCAAGAGCTACCCCTTCGTCAAG
genomic: AAGAGCACGCATCGGTGCCGTTCGATGACCAGTGCTCCATCCTGGAGAAGgtacgtaacg ... gtttctgcagGAGGCCGTGAACGTGTCGCTCCAGAACCTCAAGAGCTACCCCTTCGTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGGAGGACTGGGTCAGGATCGGCAGCCCTGCCAAGAACAAGGTGAAGAAAGAGCACGCATCGGTGCCGTTCGATGACCAGTGCTCCATCCTGGAGAAGgtacgtaacgtaaacgcacgcacacacaccgaccgtatgaataatggattatatattattggtttcgctcatcaacgaacaaattcaaggatcatcatcgacctttaattgtgtgtgtgtgtttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA