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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCCGCTATTGTGATGCTTTCTGGACAATTGGCGGATGGCTTCACAACAATCTTTGTTGGGGAATTGgtatgagccaggaaatagcttgattaatttattagaatttgcaataaaataatatgtaatttattctccttttgatcacaataagctaattcatcttagcgtttactgtgtatatgattctgggggtagatatatgaagttatgaacatgcggtttctgtttcag

Basic information

species Zea mays
transcript GRMZM2G121458_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G121458_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g39010.2 (Oryza sativa), 5'ss of exon 3
TGATGCCGCTATTGTGATGCTTTCTGGACAATTGGCGGATGGCTTCACAACAATCTTTGTTGGGGAATTGgtatgagccaggaaatagcttgattaatttattagaat-ttgcaataaaataatatgtaatttattctccttttgatcacaataagctaattcatcttag-cgtttactgtgtatatgattctgggggtagatatatgaagttatgaacatgcggtttctgtttcag
|||||| ||| |||| ||||||||||| |||||||| ||||||||| |||||||||| ||||| ||| ||||| || | | |||| | | |||||  |||| || |   |||  |||||    |    |   |||||||            ||    ||  |  |||||| ||||  ||                                                          
TGATGCTGCTGTTGTCATGCTTTCTGGTCAATTGGCAGATGGCTTCGCAACAATCTTCGTTGGAGAACTGgtacgacctaagaaagaacatgattg-tttactaaagcattgttataaagctgtg-acatcatattctc------------atggcttatcttctcttagacgttcgctactag-----------------------------------------------------

upper sequence: GRMZM2G121458_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g39010.1 (Oryza sativa), 5'ss of exon 3
TGATGCCGCTATTGTGATGCTTTCTGGACAATTGGCGGATGGCTTCACAACAATCTTTGTTGGGGAATTGgtatgagccaggaaatagcttgattaatttattagaat-ttgcaataaa--------ataatat----gtaatttattctccttttgatcacaataagctaattcatcttagcgtttactgtgtatatgattctgggggtagatatatgaagttatgaacatgcggtttctgtttcag
|||||| ||| |||| ||||||||||| |||||||| ||||||||| |||||||||| ||||| ||| ||||| || | | |||| | | |||||  |||| || |   |||  |||||        || ||||     |   ||||  ||  || ||        | ||| ||   ||  | ||||| ||||||||   |||      ||||||| | || || |          ||| |  | |||
TGATGCTGCTGTTGTCATGCTTTCTGGTCAATTGGCAGATGGCTTCGCAACAATCTTCGTTGGAGAACTGgtacgacctaagaaagaacatgattg-tttactaaagcattgttataaagctgtgacatcatattctcatggcttatcttctcttagacgttcgcta-ctagttttcct--gtgtttattgtgtata--gttccaaac-tagatatgtaaa-ttctatcttcttttttttttatccag