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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttcttatcttctttatgtgaggtgtaaagcaggaacaccagctaggaagtctgttttgagcatgaattgttccatacggtgtctttatcaaggat...

Basic information

species Zea mays
transcript GRMZM2G120517_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120517_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g35520.2 (Oryza sativa), 5'ss of exon 7
GAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttcttatcttctttatgtgag-gtgtaaagcaggaacaccagctaggaagtctgttttgagcatgaattgttccatacggtgtctttatcaaggat---
|| |||||||   ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |  ||||||| |     ||| |     ||         | ||  || ||| |    ||  | |||| ||     |  |  | | |||  |   
GAGATTGTTGTGCTGTCTGGAGCACATACACTTGGAAGGTCCAGACCTGAACGGAGTGGCTGGGGGAAACCAGAAACGAAATATACTgtatgttcttcttatctttattttcttatgtgagaaccgagttttgagcatgatctcagttct----atccactgtttcaatgtattcccatgttaagtctatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4887369|gb|AI677468.1|AI677468
EST:     GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|7162396|gb|AW520018.1|AW520018
EST:     GGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|60342201|gb|DN209174.1|DN209174
EST:     GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|24934386|gb|CA452604.1|CA452604
EST:     GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|71327463|gb|DR800349.1|DR800349
EST:     GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|67022725|gb|CO451474.1|CO451474
EST:     GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|7216381|gb|AW562503.1|AW562503
EST:     AAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: AAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|101393103|gb|EB818482.1|EB818482
EST:     GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|60397958|gb|DN230774.1|DN230774
EST:     GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|7238058|gb|AW573325.1|AW573325
EST:     GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|74246091|gb|DT654005.1|DT654005
EST:     GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|60349847|gb|DN216820.1|DN216820
EST:     GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|211351874|gb|FK984289.1|FK984289
EST:     GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|76920121|gb|DV168019.1|DV168019
EST:     GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|76292512|gb|DV032080.1|DV032080
EST:     GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|60342528|gb|DN209501.1|DN209501
EST:     GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|71759931|gb|DR957868.1|DR957868
EST:     GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|14244899|gb|BG842837.2|BG842837
EST:     GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|88753851|gb|DY537992.1|DY537992
EST:     GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
EST: gi|7145161|gb|AW506642.1|AW506642
EST:     GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACT                         AAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG
genomic: GGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTgtatgttctt ... ctctttacagAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAATGGCTG