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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTAAAGGGACTGGCATGAAGTCCATAGAACTTGCCCTTTCCATGTGTGATATTGTTGACATGTATGGTTTTACAGTTGATCCTGGGTACACGGAATGgtgagttaacgaatggctacaatactaagtatttcaacattaacatggcagctggcactatgttttccaatgttcttttgtataaatatatactctgctcactacattatttcag

Basic information

species Zea mays
transcript GRMZM2G119791_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g36420.1 (Oryza sativa), 5'ss of exon 9
GTGCTAAAGGGACTGGCATGAAGTCCATAGAACTTGCCCTTTCCATGTGTGATATTGTTGACATGTATGGTTTTACAGTTGATCCTGGGTACACGGAATGgtgagttaacgaatggctacaatactaagtatttcaacattaacatggcagctggcactatgttttccaatgttcttttgtataaatatatactctgctcactacattatttcag
|||||||||||||||| |||||||| |||||| | ||||||||||||||||||||| | ||||||||||| || |||||||| |||   ||||| ||||||| ||| || | |||| |    ||     ||| |  | ||  |         ||| |||||  ||  | ||| | ||||||  ||  || |  | ||| |||| |||| ||||||
GTGCTAAAGGGACTGGTATGAAGTCAATAGAATTGGCCCTTTCCATGTGTGATATTATCGACATGTATGGATTCACAGTTGACCCTAACTACACAGAATGgtaagtcaatgcatggatgtgtta-----tatgtagatatcca---------tggtactattgttctctatgat-ttttgtgcaaggatgttttatgcccacttcattgtttcag

upper sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA19G27540.1 (Glycine max), 5'ss of exon 2
GTGCTAAAGGGACTGGCATGAAGTCCATAGAACTTGCCCTTTCCATGTGTGATATTGTTGACATGTATGGTTTTACAGTTGATCCTGGGTACACGGAATGgtgagttaacgaatggctacaatactaagtattt-caacattaacatggcagctggcactatgttttccaatgttcttttgtataaatatatactctgctcactacat-tatttcag-----------------------------------------------------------
|||| ||||| || || ||||| || || ||  | || || ||||||||||||||| |||| || ||||| || || |||||||| || ||||| |||||||| |||        | |   ||| | | |||||   | |||       |  |   || |||  |  | ||| ||| ||| || || ||| |  | |  | | |   |  ||   ||                                                           
GTGCCAAAGGAACAGGAATGAAATCTATTGAGTTAGCACTCTCCATGTGTGATATTATTGATATATATGGCTTCACTGTTGATCCAGGATACACTGAATGgtgggtttct---ctgttttgatattgattatttattatattcttggttcttccttcattatactc-caaatcttcattttta-aattatctgtt-tatttattttgtacatgggaggttgtgatactaccgccttcaaacattttatcttcctttttatcatttttttcttacag

upper sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA16G05340.1 (Glycine max), 5'ss of exon 9
GTGCTAAAGGGACTGGCATGAAGTCCATAGAACTTGCCCTTTCCATGTGTGATATTGTTGACATGTATGGTTTTACAGTTGATCCTGGGTACACGGAATGgtgagttaacgaatggctacaatactaagtatttcaacattaacatggcagctggcactatgtt-ttccaatgttcttttgtataaatatatactctgctcactacattatttcag------------------------------------------------------------------
|||| ||||| ||||| ||||| || || ||  | || || ||||||||||||||| |||| || ||||| || || |||||||| || ||||| |||||||| |||     ||   |  |||| | | ||||| |  ||   | |||    |    |  || |  |||||| ||| ||| || || ||| |  | |  | | |   ||||||                                                                     
GTGCCAAAGGAACTGGAATGAAATCTATTGAGTTAGCACTCTCCATGTGTGATATTATTGATATATATGGCTTCACTGTTGATCCAGGATACACTGAATGgtgggtttctctat---tttaatattgattattt-attatattcttggtgtttccttcattgatactccaatcttcattttta-aattatttgtt-tatttatttatttattttgtatatgaggttgtgatactaatgccttcaaacttttgatcttcctttttatcgtttttttcttatag

upper sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 7
lower sequence: AT1G08660.1 (Arabidopsis thaliana), 5'ss of exon 9
GTGCTAAAGGGACTGGCATGAAGTCCATAGAACTTGCCCTTTCCATGTGTGATATTGTTGACATGTATGGTTTTACAGTTGATCCTGGGTACACGGAATGgtgagt-taacgaatggctacaatac---taagtatttca-acattaacatggcagct-ggcactatgttttccaatgttcttttgtataaatatatactctgctcactacattatttcag
|||| ||||| || || ||||| ||||| ||||| ||  | |||||||| |||||||||||||| |||||||| || ||||||||||| ||||| || |||  ||| |    |||  ||   || |   |   ||| ||  | |||  ||  ||   | || |   ||  | |  | | |  |    |||  | |    | |         || | |  ||
GTGCCAAAGGAACCGGGATGAAATCCATTGAACTAGCATTGTCCATGTGCGATATTGTTGACATATATGGTTTCACTGTTGATCCTGGATACACAGAGTGgcaagtatcttaaataacttttatccatattgctatctctcatatttccaaagctctttgggaggttggatacttacgattctgatcatatttttcctttgtatctttattatcaatgtag

upper sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 7
lower sequence: Vv14s0068g01150.t01 (Vitis vinifera), 5'ss of exon 9
GTGCTAAAGGGACTGGCATGAAGTCCATAGAACTTGCCCTTTCCATGTGTGATATTGTTGACATGTATGGTTTTACAGTTGATCCTGGGTACACGGAATGgtgagttaacgaatggctacaatactaagtatttcaacattaacatggcagctggcactatgttttccaatgttcttttgtataaatatatactctgctcactacattatttcag
|||| ||||| ||||| ||||| || |||||||| || |||||||||||||| ||||||||||| |||||||| || ||||||||||||||||| ||||||| |||| |  |||  |   | | ||     || | | ||  |||       | |      || ||   ||  ||| ||||      | ||  | |  |||              
GTGCCAAAGGAACTGGAATGAAATCTATAGAACTAGCACTTTCCATGTGTGACATTGTTGACATATATGGTTTCACCGTTGATCCTGGGTACACAGAATGgtcagttcaataataacattattcctc----ttcctaaatggacaccctgtttagtttgtagtatttggatcctctcttgtcacttaacatggttta-tcatagg----------