Sequence
atgc intronic sequence ATGC exonic sequenceCCATTATGTTGTTCCATTATGATGGTCGGACTACAGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGCCAGGAAGCAGACAAAATGgtatggtagtattgctgtaattatacaatgtctttttattgcccttgtcaatataatgttttgacttcaattttattgatgtgattcttgtgtttatacaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G119725_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g19510.2 (Oryza sativa), 5'ss of exon 7
CCATTATGTTGTTCCATTATGATGGTCGGACTACAGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGCCAGGAAGCAGACAAAATGgtatggtagtattgctgtaattatacaatgtctttttattgcccttgtcaatataatgttttgacttcaattttattgatgtg-attcttgtg--tttatacaag
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CTATCATGCTATTCCATTATGATGGCCGGACTACTGAATGGGATGAATTTGAGTGGTCTAAAAGAGCTATCCATGTGAGTGTCAGGAAGCAGACTAAGTGgtaggtaaaggttattgttattat-taatatgttatctgtgctgaatccatttgaatttttgctgtgaagtcttaatactgtatgtacttgttgttttacctaag
upper sequence: GRMZM2G119725_T04 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA12G29800.1 (Glycine max), 5'ss of exon 7
CCATTATGTTGTTCCATTATGATGGTCGGACTACAGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGCCAGGAAGCAGACAAAATGgtatggtagtattgctgtaattatacaatgtctt-tttattgcccttgtcaatataatgttttgacttcaattttattgatg--------tgattcttgtgtttatacaag---------------------------------------------------------------------
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CAATTTTGCTCTTTCATTATGATGGTCGGACTAGTGAATGGGATCAATTTGAGTGGTCAAGGAATGCAATCCATGTTAGTGCAAGGAAACAAACTAAATGgtatagttttctc-caatcatttttttgcatttaacttatgaaagtcataggtattggacatgggaagcctattttttggtgatcacatttaactttggaattcttaaaagaccttatcattcttaggagtgatgaccttattgcttttatgcaatttcctcgtacttaatgttgtgcag
upper sequence: GRMZM2G119725_T04 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA13G39990.1 (Glycine max), 5'ss of exon 7
CCATTATGTTGTTCCATTATGATGGTCGGACTACAGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGCCAGGAAGCAGACAAAATGgtatggtagtattgctgtaattatacaatgtctt-tttattgcccttgtcaatataatgttttg-acttcaattttattg-------atgtgattcttgtgtttatacaag----------------------------------------------------------------------------------
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CAATTTTGCTCTTTCATTATGATGGTCGGACTAGTGAATGGGATCAATTTGAGTGGTCAAGGAGTGCAATCCATGTCAGCGCAAGGAAACAAACTAAATGgtatagttttctc-caatcatttttttgcatttaacttatgaaagtcataggtattggacatgggaagcctatttttttgtgatcacatttaactttggaattcttaaaagaccttatcattcttaggagtgatgaccttattgctatactcctttgcttttatacaattttctcgtactcaatgttgtgcag
upper sequence: GRMZM2G119725_T04 (Zea mays), 5'ss of exon 7
lower sequence: AT1G08040.1 (Arabidopsis thaliana), 5'ss of exon 7
CCATTATGTTGTTCCATTATGATGGTCGGACTACAGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGCCAGGAAGCAGACAAAATGgtatggtagtattgctgtaatt--atacaatgtctttttattgcccttgtcaatataatgttttgacttcaattttattgatgtgattcttgtgtttatacaag
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AAATATTGTTATTCCATTATGATGGCCGAACAACTGAGTGGGACCAGTTTGAGTGGTCTAAAAATGCAATACATATCAGTGCAAAAAAGCAAACAAAATGgtaagaaatctgaaatgtaggtcagcacgatatactctaattcttctaatagtcatgaaaatttatctacaaaatcctcaccttgagctgtttatctttggcag
upper sequence: GRMZM2G119725_T04 (Zea mays), 5'ss of exon 7
lower sequence: Vv06s0004g02700.t01 (Vitis vinifera), 5'ss of exon 7
CCATTATGTTGTTCCATTATGATGGTCGGACTACAGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGCCAGGAAGCAGACAAAATGgtatggtagtattgctgtaattatacaatgtctttttattgcccttgtcaatataatgttttgacttcaattttattgatgtgattcttgtgtttatacaag-
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AAATTTTGCTTTTTCACTATGATGGTCGAACAAGTGAATGGGATCAATTTGAGTGGTCAAAAACTGCAATTCATGTTAGTGCAAGAAAACAAACAAAATGgtaagg-actctatacataattttg-agcataacactctgacccctttcagtgagaagtttaaacttaagatgtaacaaggtc-ctcttataagaaggaaaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211445045|gb|FL132441.1|FL132441EST: GAGTGGTCTAAAAGAGCAATCCATGTGAGTGCCAGGAAGCAGACAAAATG GTGGTATGCAAAACGATTTTTGCATCCCGATGTTGTTGCCAGATATGATTA
genomic: GAGTGGTCTAAAAGAGCAATCCATGTGAGTGCCAGGAAGCAGACAAAATGgtatggtagt ... tttatacaagGTGGTATGCAAAACGATTTTTGCATCCCGATGTTGTTGCCAGATATGATTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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CCATTATGTTGTTCCATTATGATGGTCGGACTACAGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGCCAGGAAGCAGACAAAATGgtatggtagtattgctgtaattatacaatgtctttttattgcccttgtcaatataatgttttgacttcaattttattgatgtgattcttgtgtttatacaag
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