1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
CCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTTCCATTAGCAATGATAACCCGGAAGgttgctagcaatgcagtacacttctcctggttgagttaagaaaggaaatgataataactaaggcagtacatttttgcatatatggttgggcag
species | Zea mays |
transcript | GRMZM2G119482_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTGGAGCTATTACACCATGGAATTTTCCATTAGCAATGATAACCCGGAAG GTTGGACCAGCTTTGGCCTGTGGCTGTACTGTTGTTGTCAAGCCATCGGAGEST: gi|76289708|gb|DV029276.1|DV029276
genomic: TTGGAGCTATTACACCATGGAATTTTCCATTAGCAATGATAACCCGGAAGgttgctagca ... ggttgggcagGTTGGACCAGCTTTGGCCTGTGGCTGTACTGTTGTTGTCAAGCCATCGGAG
EST: TTGGAGCTATTACACCATGGAATTTTCCATTAGCAATGATAACCCGGAAG GTTGGACCAGCTTTGGCCTGTGGCTGTACTGTTGTTGTCAAGCCATCGGAGEST: gi|149000791|gb|EE038015.2|EE038015
genomic: TTGGAGCTATTACACCATGGAATTTTCCATTAGCAATGATAACCCGGAAGgttgctagca ... ggttgggcagGTTGGACCAGCTTTGGCCTGTGGCTGTACTGTTGTTGTCAAGCCATCGGAG
EST: TTGGAGCTATTACACCATGGAATTTTCCATTAGCAATGATAACCCGGAAG GTTGGACCAGCTTTGGCCTGTGGCTGTACTGTTGTTGTCAAGCCATCGGAGEST: gi|78093012|gb|DV521386.1|DV521386
genomic: TTGGAGCTATTACACCATGGAATTTTCCATTAGCAATGATAACCCGGAAGgttgctagca ... ggttgggcagGTTGGACCAGCTTTGGCCTGTGGCTGTACTGTTGTTGTCAAGCCATCGGAG
EST: GCTATTACACCCTGGAATTTTTTCCATTTTAGCAATGATAACCCCGGAAG GTTGGACCAGCTTTGGCCTGTGGGCTGTACTGTTGTTGGTCAGGCCATCGEST: gi|71330637|gb|DR802090.1|DR802090
genomic: GCTATTACACCATGGAATTTT--CCATT--AGCAATGATAACCC-GGAAGgttgctagca ... ggttgggcagGTTGGACCAGCTTTGGCCTGTGG-CTGTACTGTTGTTG-TCAAGCCATCG
EST: TTGGAGCTATTACACCATGGAATTTTCCATTAGCAATGATAACCCGGAAG GTTGGACCAGCTTTGGCCTGTGGCTGTACTGTTGTTGTCAAGCCATCGGAG
genomic: TTGGAGCTATTACACCATGGAATTTTCCATTAGCAATGATAACCCGGAAGgttgctagca ... ggttgggcagGTTGGACCAGCTTTGGCCTGTGGCTGTACTGTTGTTGTCAAGCCATCGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTTCCATTAGCAATGATAACCCGGAAGgttgctagcaatgcagtacacttctcctggttgagttaagaaaggaaatgataataactaaggcagtacatttttgcatatatggttgggcag
- - - - - - TTGGAG
- - - - - - - GGAGCT
- - - - - - - - - - - - - - CATGGA