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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGCTAGAGAGGATACACACTATCTGCTATATATATATGACCTGATGAGATTGAGACTAGTGAATGGGTCATCATGTGAAAATGATCTTCTTTTAGAGgtatttttttgttagtgctgcattgtcccttcttccctatctattgtccaactttactggacttgctcagtattctcttcctttggtattctcccctaga...

Basic information

species Zea mays
transcript GRMZM2G118917_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G118917_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os10g30100.1 (Oryza sativa), 5'ss of exon 7
ATATGCTAGAGAGGATACACACTATCTGCTATATATATATGACCTGATGAGATTGAGACTAGTGAATGGGTCATCATGTGAAAATGATCTTCTTTTAGAGgt-atttttttgttagtgctgcattgtcccttcttccctatctattgtccaactt-tactggacttgctcagtattctcttcctttggtattctcccctaga-
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GTATGCTAGAGAAGATACACATTATCTGCTTTACATATATGATTTGATGAGACTCAGACTGGTGAAAGAGTCTTCAGATGAAAATGATCTTCTTTTAGAGgttagatttttgct--ccctatgttgactttgctcccttatctggtggtcaacctgtctctgacagcaacaacatt-tatgcagtcccagttttccctgagtc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78109406|gb|DV527822.1|DV527822
EST:     GATTGAGACTAGTGAATGGGTCATCATGTGAAAATGATCTTCTTTTAGAG                         GTTTGCAAGCGCAGCAACGAAATTTGCTTGCAACTGTATGAGAAGGAGCAG
genomic: GATTGAGACTAGTGAATGGGTCATCATGTGAAAATGATCTTCTTTTAGAGgtattttttt ... attactgcagGTTTGCAAGCGCAGCAACGAAATTTGCTTGCAACTGTATGAGAAGGAGCAG