1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGCTGATGAAAAACTTTCAAGCTGTGTGACGGAGATACCCTGCTGCAGCTCTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTGgtaagaagatgacacccttgtacaacagccggtttttttatttgacgttttttagtataaagttgtactgttgagagtcaaataaaaagaaatggaggtagtattatttatttcaagtcaatgcttatcaaacactggtggctggctgcag
species | Zea mays |
transcript | GRMZM2G118344_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTG GAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAGEST: gi|4646562|gb|AI491300.2|AI491300
genomic: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTGgtaagaagat ... ctggctgcagGAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAG
EST: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTG GAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCCCAAGEST: gi|9461925|gb|BE453973.1|BE453973
genomic: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTGgtaagaagat ... ctggctgcagGAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAG
EST: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTG GAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAGEST: gi|12046750|gb|BF728889.1|BF728889
genomic: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTGgtaagaagat ... ctggctgcagGAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAG
EST: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTG GAGGATTACAAATTCGAGGACCCTGTCGGGAAGCTAAAATGCAATCACAAGEST: gi|91871238|gb|EB401314.1|EB401314
genomic: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTGgtaagaagat ... ctggctgcagGAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAG
EST: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTG GAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAGEST: gi|50334693|gb|CO529819.1|CO529819
genomic: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTGgtaagaagat ... ctggctgcagGAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAG
EST: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTG GAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAGEST: gi|6563804|gb|AW231336.1|AW231336
genomic: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTGgtaagaagat ... ctggctgcagGAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAG
EST: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTG GAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAGEST: gi|60347420|gb|DN214393.1|DN214393
genomic: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTGgtaagaagat ... ctggctgcagGAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAG
EST: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTG GAGGATTACAAATTCGAGGACCCTGTCGGGAAGCTAAAATGCAATCACAAGEST: gi|14245256|gb|BG873838.1|BG873838
genomic: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTGgtaagaagat ... ctggctgcagGAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAG
EST: TGTAATTTGCCTG GAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAGEST: gi|67019275|gb|CO448024.1|CO448024
genomic: TGTAATTTGCCTGgtaagaagat ... ctggctgcagGAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAG
EST: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTG GAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAGEST: gi|88748917|gb|DY533058.1|DY533058
genomic: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTGgtaagaagat ... ctggctgcagGAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAG
EST: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTG GAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAGEST: gi|67016991|gb|CO445740.1|CO445740
genomic: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTGgtaagaagat ... ctggctgcagGAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAG
EST: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTG GAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAGEST: gi|116823896|gb|EC867473.1|EC867473
genomic: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTGgtaagaagat ... ctggctgcagGAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAG
EST: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTG GAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAGEST: gi|71427069|gb|DR808119.1|DR808119
genomic: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTGgtaagaagat ... ctggctgcagGAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAG
EST: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTG GAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAGEST: gi|166483900|gb|EG135194.1|EG135194
genomic: CTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTGgtaagaagat ... ctggctgcagGAGGATTACAAATTCGAGGACTCTGTCGGGAAGCTAAAATGCAATCACAAG
EST: CCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTG GAGGATTACAAATTCGAGGACTCT
genomic: CCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTGgtaagaagat ... ctggctgcagGAGGATTACAAATTCGAGGACTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGATGAAAAACTTTCAAGCTGTGTGACGGAGATACCCTGCTGCAGCTCTGCCCGTACTCATGATGATAATGAGAGCGCAAGATGTGTAATTTGCCTGgtaagaagatgacacccttgtacaacagccggtttttttatttgacgttttttagtataaagttgtactgttgagagtcaaataaaaagaaatggaggtagtattatttatttcaagtcaatgcttatcaaacactggtggctggctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG