1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAAAGGTGCGTGCTATTTTGGGAGGAAAGATTCGGTTTGTACTTTCAGGTGGAGCACCTCTATCTGGAGATACTCAGAGATTTATCAATATATGCCTTGGgtaagattatgtatgcctcatttctgttgtttgatggcaattatcttgaaatcctatgttcccatcgcatgcatttaatacgataaatatgttatgacttcctcactgtgtttgcagtctgacattgataaggtttatgcaatttcag
species | Zea mays |
transcript | GRMZM2G118286_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGAGCACCTCTATCTGGAGATACTCAGAGATTTATCAATATATGCCTTGG GGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGACEST: gi|20802928|gb|BQ293978.1|BQ293978
genomic: GGAGCACCTCTATCTGGAGATACTCAGAGATTTATCAATATATGCCTTGGgtaagattat ... gcaatttcagGGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGAC
EST: GGAGCACCTCTATCTGGAGATACTCAGAGATTTATCAATATATGCCTTGG GGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGACEST: gi|211356219|gb|FL190939.1|FL190939
genomic: GGAGCACCTCTATCTGGAGATACTCAGAGATTTATCAATATATGCCTTGGgtaagattat ... gcaatttcagGGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGAC
EST: GGAGCACCTCTATCTGGAGATACTCAGAGATTTATCAATATATGCCTTGG GGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGACEST: gi|211130815|gb|FL468263.1|FL468263
genomic: GGAGCACCTCTATCTGGAGATACTCAGAGATTTATCAATATATGCCTTGGgtaagattat ... gcaatttcagGGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGAC
EST: AGATACTCAGAGATTTATCAATATATGCYTTGG GGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGRAGGGACEST: gi|211356216|gb|FL190936.1|FL190936
genomic: AGATACTCAGAGATTTATCAATATATGCCTTGGgtaagattat ... gcaatttcagGGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGAC
EST: GGAGCACCTCTATCTGGAGATACTCAGAGATTTATCAATATATGCCTTGG GGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGACEST: gi|22715219|gb|BU197644.1|BU197644
genomic: GGAGCACCTCTATCTGGAGATACTCAGAGATTTATCAATATATGCCTTGGgtaagattat ... gcaatttcagGGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGAC
EST: GGAGCACCTCTATCTGGAGATACTCAGAGATTTATCAATATATGCCTTGG GGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGACEST: gi|26456576|gb|CA828159.1|CA828159
genomic: GGAGCACCTCTATCTGGAGATACTCAGAGATTTATCAATATATGCCTTGGgtaagattat ... gcaatttcagGGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGAC
EST: GGAGCACCTCTATCTGGAGATACTCAGAGATTTATCAATATATGCCTTGG GGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGACEST: gi|78026723|gb|DV495110.1|DV495110
genomic: GGAGCACCTCTATCTGGAGATACTCAGAGATTTATCAATATATGCCTTGGgtaagattat ... gcaatttcagGGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGAC
EST: GGAGCACCTCTATCTGGAGATACTCAGAGATTTATCAATATATGCCTTGG GGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGACEST: gi|211356220|gb|FL190940.1|FL190940
genomic: GGAGCACCTCTATCTGGAGATACTCAGAGATTTATCAATATATGCCTTGGgtaagattat ... gcaatttcagGGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGAC
EST: GGAGCACCTCTATCTGGAGATACTCAGAGATTTATCAATATATGCCTTGG GGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGAC
genomic: GGAGCACCTCTATCTGGAGATACTCAGAGATTTATCAATATATGCCTTGGgtaagattat ... gcaatttcagGGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGGTGCGTGCTATTTTGGGAGGAAAGATTCGGTTTGTACTTTCAGGTGGAGCACCTCTATCTGGAGATACTCAGAGATTTATCAATATATGCCTTGGgtaagattatgtatgcctcatttctgttgtttgatggcaattatcttgaaatcctatgttcccatcgcatgcatttaatacgataaatatgttatgacttcctcactgtgtttgcagtctgacattgataaggtttatgcaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT