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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCGGAATAGTCCTGGACTTCAACTGGTACGAGGCTCTTACAAACTCACCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctatatcagtatcctctgtcagaacctattctaagttttggtagatgagaactaaaacacagctaactgttacatccgacgcag

Basic information

species Zea mays
transcript GRMZM2G118003_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G118003_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g49600.1 (Oryza sativa), 5'ss of exon 7
AGGTCGGAATAGTCCTGGACTTCAACTGGTACGAGGCTCTTACAAACTCACCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaag-ctatatc-agtatcctctgtcagaacctattctaagttttggtagatgagaac----taaaacacagctaactgttacatccgacgcag-----------------------------------------------
| || |||||||| ||||||||||| ||||| || |||||| | |||||| |||| ||||||||||| || |||||||||||||||||||||||||| ||||||| | |||   | ||||||||   | | |||||| |   |||| |   |||  | |    | || | |||  || | |  |   |  |   |                                               
AAGTTGGAATAGTTCTGGACTTCAATTGGTATGAAGCTCTTTCCAACTCAACTGAAGACCAAGCAGCGGCTCAAAGAGCCAGGGACTTCCACATTGGTTGgtaagaccataaagaatatcctctcagaaagcctatttt---ttttagataatggaagctttattaatctcagtaaattctatcgagcttcattgaaaaagaattatcattgttaggattgctaacggttgcaatggtccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22546685|gb|BU098996.1|BU098996
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAAT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAAT
EST: gi|87157163|gb|DY401952.1|DY401952
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|60350347|gb|DN217320.1|DN217320
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|31359746|gb|CD444103.1|CD444103
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|67017631|gb|CO446380.1|CO446380
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|67021285|gb|CO450034.1|CO450034
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|18659314|gb|BM500272.1|BM500272
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|32846693|gb|CD986374.1|CD986374
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|31611947|gb|CD568569.1|CD568569
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|32846787|gb|CD986468.1|CD986468
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGGCTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|211416183|gb|FL300110.1|FL300110
EST:     CCTGATGACCAAGCAGCAGCCCAAASAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|32829422|gb|CD969100.1|CD969100
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|67022090|gb|CO450839.1|CO450839
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|67016031|gb|CO444780.1|CO444780
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|32793518|gb|CD945754.1|CD945754
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATC
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATC
EST: gi|67030931|gb|CO459680.1|CO459680
EST:     CCTGATGACCAAGCAGCATTCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|29543733|gb|CB604113.1|CB604113
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|32847767|gb|CD987448.1|CD987448
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|31353887|gb|CD438244.1|CD438244
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|32847456|gb|CD987137.1|CD987137
EST:     CCTGATGACCAAGTAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|32847506|gb|CD987187.1|CD987187
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|211416176|gb|FL300103.1|FL300103
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|67021301|gb|CO450050.1|CO450050
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|211416180|gb|FL300107.1|FL300107
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|67019109|gb|CO447858.1|CO447858
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|211416182|gb|FL300109.1|FL300109
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
EST: gi|211416178|gb|FL300105.1|FL300105
EST:     CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTG                         GTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT
genomic: CCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGACTTCCACATTGGCTGgtaagctata ... tccgacgcagGTTTGTTGATCCATTGATAAACGGACACTATCCACAGATAATGCAAGATCT