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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgttccttgcacctcagtacctcactatgagttaacctttccaaaaaagaatgtctaggtttagtcataatttctagcattgttgctccaggct...

Basic information

species Zea mays
transcript GRMZM2G116919_T01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37421879|gb|CF648643.1|CF648643
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|76917612|gb|DV166918.1|DV166918
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|50332246|gb|CO527372.1|CO527372
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|78544504|gb|DV622002.1|DV622002
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|88756479|gb|DY540620.1|DY540620
EST:     CATTCTCACTGGGGTTCTGTCCTTCAGG                         ATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|34391285|gb|CF384513.1|CF384513
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATAAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|78123531|gb|DV541915.1|DV541915
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|71420480|gb|DR805114.1|DR805114
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|67022830|gb|CO451579.1|CO451579
EST:     CATTCTCACTGGGCTTCTGTCTTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATAAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|31364477|gb|CD448832.1|CD448832
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATAAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|4804485|gb|AI665355.2|AI665355
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|37382371|gb|CF628128.1|CF628128
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATAAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|5343079|gb|AI795489.1|AI795489
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|71756603|gb|DR954540.1|DR954540
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|8103224|gb|AW927877.1|AW927877
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATAAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|60346203|gb|DN213176.1|DN213176
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATAAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|78024877|gb|DV493264.1|DV493264
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|71320224|gb|DR796871.1|DR796871
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|9742575|gb|BE518723.1|BE518723
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|60341447|gb|DN208420.1|DN208420
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: gi|16920917|gb|BM074893.1|BM074893
EST:     CATTCTCACTGGGCTTCTGTCCTTCATG                         ATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
genomic: CATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG