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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTCATTGGTGACAGGCAGGCCAATTCTGCTTGCACTTGAGGATATTGATGGCAGCCCTTCTTTTTTAGAAAAAGCCCTGCGCTTTCTTGAGAAACATGgtgggggcaaaaactatcttgaacctgattttttacatgttgctaagttagtttccttggcgtgatttcgattgttttgcaaatctcctcttgcag

Basic information

species Zea mays
transcript GRMZM2G115975_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115975_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g24180.1 (Oryza sativa), 5'ss of exon 7
AAGTCATTGGTGACAGGCAGGCCAATTCTGCTTGCACTTGAGGATATTGATGGCAGCCCTTCTTTTTTAGAAAAAGCCCTGCGCTTTCTTGAGAAACATGgtgggggcaaaaactatcttgaacctg----atttttt--acatgttgctaagttagttt--ccttggcgtgat-ttcgattgttttgcaaatctcctcttgcag
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AAGTCGTTAGTTGTTGGCAGGCCAATTCTTCTCGCACTTGAGGATATTGATGGAAGCCCTTCTTTTCTAGAAAAAGCTCTGCGTTTTCTTGAGAAATATGgtgggtgcacaaataatttttaactagcaccatctttagaacctggagtactgctagtttagcatctgtacaatgtacaatagttatgttaatcttttcttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32837002|gb|CD976680.1|CD976680
EST:     TGGCAGCCCTTCTTTTTTAGAAAAAGCCCTGCGCTTTCTTGAGAAACATG                         GAATAAAGGTGGAAGGAATTTTGAGGCAGTCTGCAGATGTGGAAGAAGTTG
genomic: TGGCAGCCCTTCTTTTTTAGAAAAAGCCCTGCGCTTTCTTGAGAAACATGgtgggggcaa ... cctcttgcagGAATAAAGGTGGAAGGAATTTTGAGGCAGTCTGCAGATGTGGAAGAAGTTG
EST: gi|31363590|gb|CD447947.1|CD447947
EST:     GCTTTCTTGAGAAACATG                         GAATAAAGGTGGAAGGAATTTTGAGGCAGTCTGCAGATGTGGAAGAAGTTG
genomic: GCTTTCTTGAGAAACATGgtgggggcaa ... cctcttgcagGAATAAAGGTGGAAGGAATTTTGAGGCAGTCTGCAGATGTGGAAGAAGTTG