Sequence
atgc intronic sequence ATGC exonic sequenceCCTATTGTGCAAAGAAAAGGATTGGCTGTGGTTGATTGTTCCTGGGCACGTTTAAGTGATGTCCCTTTTGTGAAACTACGTTGCGGTGCTCCTCGTCTCTgtaagatcaccatatcttaattatttgagtgaaatttactaggaatccttaaacatttcctgaactgtggaccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G114758_T05 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g09920.1 (Oryza sativa), 5'ss of exon 6
CCTATTGTGCAAAGAAAAGGATTGGCTGTGGTTGATTGTTCCTGGGCACGTTTAAGTGATGTCCCTTTTGTGAAACTACGTTGCGGTGCTCCTCGTCTCTgtaagatcaccatatcttaattatttgagtgaa--------atttactaggaatccttaaacatttcctgaactgtggaccag------------------
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CATATCGTGCAAAGAAAAGGACTTGCTGTTGTTGATTGTTCGTGGGCGCGATTAAGTGATGTCCCTTTTGTGAAACTCCGTTGTGGCGCTCCTCGTCTCTgtaagaccatcatattcgagtaacttcaatgagccgattgtagttgctgggatcattcctaccttttctgcgcta-aatccagaactctagaagcgtacca
upper sequence: GRMZM2G114758_T05 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA05G31550.1 (Glycine max), 5'ss of exon 6
CCTATTGTGCAAAGAAAAGGATTGGCTGTGGTTGATTGTTCCTGGGCACGTTTAAGTGATGTCCCTTTTGTGAAACTACGTTGCGGTGCTCCTCGTCTCTgtaagatcaccatatct--taattatttgagtgaaatttactaggaatccttaaacatt--tcctgaactgtggaccag---------------------
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TCTTTAATCCAGAAGAAAGGATTGGCTGTTGTGGATTGTTCATGGGCACGCTTAGATGATGTGCCTTTCATGAGGCTGCGCTGTGCTGCTCCTCGCCTCTgtatgaacttaaccaccgacaagaatatattcaaaatttgttttatatactttgttttgcgtgcttatttgtttatacactttcaaatatgttagtctat
upper sequence: GRMZM2G114758_T05 (Zea mays), 5'ss of exon 7
lower sequence: AT5G10070.1 (Arabidopsis thaliana), 5'ss of exon 6
CCTATTGTGCAAAGAAAAGGATTGGCTGTGGTTGATTGTTCCTGGGCACGTTTAAGTGATGTCCCTTTTGTGAAACTACGTTGCGGTGCTCCTCGTCTCTgtaagatcaccatatcttaatt-----atttgagtgaaatttactaggaatccttaaacatttcctgaactgtggaccag
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GATCTGATTAAAAGGAAAGGATTAGCTGTTGTTGATTGTTCTTGGGCACGTCTAACTGATGTCCCGTTTGCAAAGCTGCGTTGTACTGCACCTCGTCTTTgtaagaac-ttacgacttaactgataaatatgtatccagatctctaggaaatgtttctaatttcttttatggttg--cagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60347651|gb|DN214624.1|DN214624EST: TTTAAGTGATGTCCCTTTTGTGAAACTACGTTGCGGTGCTCCTCGTCTCT ATTCTCACTCTGATTGAACCACTTAGAAACTTCACCCAGATCCTGAGTTTA
genomic: TTTAAGTGATGTCCCTTTTGTGAAACTACGTTGCGGTGCTCCTCGTCTCTgtaagatcac ... tgtggaccagATTCTCACTCTGATTGAACCACTTAGAAACTTCACCCAGATCCTGAGTTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTATTGTGCAAAGAAAAGGATTGGCTGTGGTTGATTGTTCCTGGGCACGTTTAAGTGATGTCCCTTTTGTGAAACTACGTTGCGGTGCTCCTCGTCTCTgtaagatcaccatatcttaattatttgagtgaaatttactaggaatccttaaacatttcctgaactgtggaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC