1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCATGGATAACTACTGTTGCTGCTGGAGTTGATGACCGCAGATACAAGAATCATTTAACACTAGGAAATGGAAAACTTCTCTCTGGGCTTGGAGTATCACgtaagtatttttctaagtacatgtcaacaaaatcatgatgaattatttgtcagtactgtgtgcagcattttgaattgtggattgtagaattgtgcaaaaa...
species | Zea mays |
transcript | GRMZM2G114394_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCATTTAACACTAGGAAATGGAAAACTTCTCTCTGGGCTTGGAGTATCAC CTGCAACACATGGGAATATGTCATTCAGCTTGATTTCTGCAGCTGATGCTCEST: gi|28909947|gb|CB331179.1|CB331179
genomic: TCATTTAACACTAGGAAATGGAAAACTTCTCTCTGGGCTTGGAGTATCACgtaagtattt ... tacgatacagCTGCAACACATGGGAATATGTCGTTCAGCTTGATTTCTGCAGCTGATGCTC
EST: TCATTTAACACTAGGAAATGGAAAACTTCTCTCTGGGCTTGGAGTATCAC CTGCAACACATGGGAATATGTCGTTCAGCTTGATTTCTGCAGCTGATGCTCEST: gi|67043292|gb|CO469547.1|CO469547
genomic: TCATTTAACACTAGGAAATGGAAAACTTCTCTCTGGGCTTGGAGTATCACgtaagtattt ... tacgatacagCTGCAACACATGGGAATATGTCGTTCAGCTTGATTTCTGCAGCTGATGCTC
EST: TCATTTAACACTAGGAAATGGAAAACTTCTCTCTGGGCTTGGAGTATCAC CTGCAACACATGGGAATATGTCATTCAGCTTGATTTCTGCAGCTGATGCTCEST: gi|31351455|gb|CD435812.1|CD435812
genomic: TCATTTAACACTAGGAAATGGAAAACTTCTCTCTGGGCTTGGAGTATCACgtaagtattt ... tacgatacagCTGCAACACATGGGAATATGTCGTTCAGCTTGATTTCTGCAGCTGATGCTC
EST: TCATTTAACACTAGGAAATGGAAAACTTCTCTCTGGGCTTGGAGTATCAC CTGCAACACATGGGAATATGTCATTCAGCTTGATTTCTGCAGCTGATGCTC
genomic: TCATTTAACACTAGGAAATGGAAAACTTCTCTCTGGGCTTGGAGTATCACgtaagtattt ... tacgatacagCTGCAACACATGGGAATATGTCGTTCAGCTTGATTTCTGCAGCTGATGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATGGATAACTACTGTTGCTGCTGGAGTTGATGACCGCAGATACAAGAATCATTTAACACTAGGAAATGGAAAACTTCTCTCTGGGCTTGGAGTATCACgtaagtatttttctaagtacatgtcaacaaaatcatgatgaattatttgtcagtactgtgtgcagcattttgaattgtggattgtagaattgtgcaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacaaaa