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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACTGTCCATGTAAAAAATGCGACTCTTCCCAAGGGCACATATGTGAAATTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCATgtaaggaaacctttaaaattgtcctataatgatcttgaaaattctcttcatttctcttggcattaggcgttatcattctcattacttgctgttaaattttccag

Basic information

species Zea mays
transcript GRMZM2G114220_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G114220_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g48770.2 (Oryza sativa), 5'ss of exon 3
ACACTGTCCATGTAAAAAATGCGACTCTTCCCAAGGGCACATATGTGAAATTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCATgtaaggaaacctttaaaattgtcctataatgatcttgaaaattctcttcatttctcttggcattaggcgttatcattctcattacttgctgttaaattttccag
||||||||| |||||||||| | || ||||||||||| |||||||| || ||||| |||||||||||||| ||| |||| || ||||| ||||| ||||||| |||| |   | ||||   |||  || |        |||  |  | | |||||   || | |   | || | ||  | ||   ||||| |   |  || |||
ACACTGTCCGTGTAAAAAATACAACCCTTCCCAAGGGTACATATGTCAAGTTGCAGCCTCACACAACTGACTTTTTGGACATCTCAAATCCGAAGGCCATgtgaggatatgataaaaacgctccattatt--------aaaaccattccgtttcttggggaaatcatcattctaatgataatgctttgctttgtgacattgcag

upper sequence: GRMZM2G114220_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT4G38930.1 (Arabidopsis thaliana), 5'ss of exon 7
ACACTGTCCATGTAAAAAATGCGACTCTTCCCAAGGGCACATATGTGAAATTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCATgtaaggaaacctttaaaattgtcctataatgatcttgaaaattctcttcatttctcttggcattaggcgttatcattctcattacttgctgttaaattttccag-------------
|||  ||    || | |||||  |||||||| ||||| || || |||||| ||||||| |||||||| || ||||| |||||  | ||||||||||||||||||      |||     |   ||| |  |  | |||     ||  |  |    |       || |    || | | |||  |   |  ||      || |                
ACATGGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACCTACGTGAAACTGCAACCCCACACAACAGACTTTCTCGATATAGCTAACCCGAAAGCCATgtaattccgacttactcctccccctcttgtatttttg---tctccatctagactttgaattctttgcgaataccgtactctgtgtatattgaaccggttcctgtgtttctgctgcag

upper sequence: GRMZM2G114220_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv03s0038g00750.t01 (Vitis vinifera), 5'ss of exon 7
ACACTGTCCATGTAAAAAATGCGACTCTTCCCAAGGGCACATATGTGAAATTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCATgtaaggaaacctttaaaattgtc-ctataatgatcttgaaaattctcttcatttctcttggcattaggcgttatcat-tctcattacttgctgttaaattttccag
||||||| || || ||||||| ||||||||| ||||| |||||||| ||| | || || || ||||| || ||  |||||||||||||||| |||||||||| ||       | | |||  |   |   | ||    |||  |        | |||||||   ||   |  |||  | |    || |  |       | |      
ACACTGTGCAGGTGAAAAATGTGACTCTTCCGAAGGGAACATATGTAAAACTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCATgtgagttgttgctaataatctttattgctagga----gaaggtaggtaaggtgtctcttgatgttcatcaatattttatgctgttgcaagagaggggaatcctg--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211389874|gb|FL156779.1|FL156779
EST:     TTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCAT                         CTTGGAAAAAACTTTAAGAAATTTCTCCTGCTTAACCACGGGAGACAGCAT
genomic: TTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCATgtaaggaaac ... aattttccagCTTGGAAAAAACTTTAAGAAATTTCTCCTGCTTAACCACGGGAGACAGCAT
EST: gi|211392499|gb|FL156788.1|FL156788
EST:     TGCAACCTCACACAACTGATTTTCTGGATATTTCAAAACCGAAAGCCAAT                         CTGGGAAAAA-CTTTTAAGAAATTTC
genomic: TGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCA-Tgtaaggaaac ... aattttccagCTTGGAAAAAACTTT-AAGAAATTTC
EST: gi|32850146|gb|CD989827.1|CD989827
EST:     TTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCAT                         CTTGGAAAAAGCTTTAAGAAATTTCTCCTGCTTAACCACGGGAGACAGCAT
genomic: TTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCATgtaaggaaac ... aattttccagCTTGGAAAAAACTTTAAGAAATTTCTCCTGCTTAACCACGGGAGACAGCAT
EST: gi|76909136|gb|DV163240.1|DV163240
EST:     TTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCAT                         CTTGGAAAAAACTTTAAGAAATTTCTCCTGCTTAACCACGGGAGACAGCAT
genomic: TTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCATgtaaggaaac ... aattttccagCTTGGAAAAAACTTTAAGAAATTTCTCCTGCTTAACCACGGGAGACAGCAT
EST: gi|71417924|gb|DR804257.1|DR804257
EST:     TTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCAT                         CTTGGAAAAAACTTTAAGAAATTTCTCCTGCTTAACCACGGGAGACAGCAT
genomic: TTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCATgtaaggaaac ... aattttccagCTTGGAAAAAACTTTAAGAAATTTCTCCTGCTTAACCACGGGAGACAGCAT
EST: gi|91049005|gb|EB159423.1|EB159423
EST:     TTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCAT                         CTTGGAAAAAACTTTAAGAAATTTCTCCTGCTTAACCACGGGAGACAGCAT
genomic: TTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCATgtaaggaaac ... aattttccagCTTGGAAAAAACTTTAAGAAATTTCTCCTGCTTAACCACGGGAGACAGCAT
EST: gi|60349374|gb|DN216347.1|DN216347
EST:     GATTTTCTGGATATTTCAAACCCGAAAGCCAT                         CTTGGAAAAAACTTTAAGAAATTTCTCCTGCTTAACCACGGGAGACAGCAT
genomic: GATTTTCTGGATATTTCAAACCCGAAAGCCATgtaaggaaac ... aattttccagCTTGGAAAAAACTTTAAGAAATTTCTCCTGCTTAACCACGGGAGACAGCAT
EST: gi|91873355|gb|EB403312.1|EB403312
EST:     TTGCAACCTCACACAACTGATTTTCTGGATATTTCACACCCGAAAGCCAT                         CTTTGGAAAAAACTTTAAGACATTTCTCCTGCTTAACCACGGGGAGACAGC
genomic: TTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCATgtaaggaaac ... aattttccagCTT-GGAAAAAACTTTAAGAAATTTCTCCTGCTTAACCACGGG-AGACAGC
EST: gi|14242735|gb|BG840580.2|BG840580
EST:     TTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCAT                         CTTGGAAAAAACTTTAAGAAATTTCTCCTGCTTAACCACGGGAGACAGCAT
genomic: TTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCATgtaaggaaac ... aattttccagCTTGGAAAAAACTTTAAGAAATTTCTCCTGCTTAACCACGGGAGACAGCAT
EST: gi|213183590|gb|FM196389.1|FM196389
EST:     TTGCAACCTCACACAACTGATTTTCTGGATCTTTCNNNCCCGAAAGCCAT                         CTTGGAAAAAACTTTAAGAAATTTCTCCTGCTNNNCCACGGGNNNCAGCAT
genomic: TTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCATgtaaggaaac ... aattttccagCTTGGAAAAAACTTTAAGAAATTTCTCCTGCTTAACCACGGGAGACAGCAT
EST: gi|84970179|gb|DW468529.1|DW468529
EST:     ATTTCAAACCCGAAAGCCAT                         CTTGGAAAAAACTTTAAGAAATTTCTCCTTGCTTAACCACGGGAGACAGCA
genomic: ATTTCAAACCCGAAAGCCATgtaaggaaac ... aattttccagCTTGGAAAAAACTTTAAGAAATTTCTCC-TGCTTAACCACGGGAGACAGCA
EST: gi|93015584|gb|EB641104.1|EB641104
EST:     TTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCAT                         CTTGGAAAAAACTTTAAGAAATTTCTCCTGCTTAACCACGGGAGACAGCAT
genomic: TTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCATgtaaggaaac ... aattttccagCTTGGAAAAAACTTTAAGAAATTTCTCCTGCTTAACCACGGGAGACAGCAT