Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCACTTCCTTGCGTCAAACAATGATTGTGGACTTAGAGACTTTGACATGGAAAAGTTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAATgtaagcctgcagtgcttgttgaattttcaattttctatctaaatctagctgctgaagtcaatgctcatgttttgtcaaagagcatgtcttaaataaggacagaaacacattactgcatcctgtgttggcccctgttttaattttctgcag

Basic information

species Zea mays
transcript GRMZM2G113726_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113726_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g38880.6 (Oryza sativa), 5'ss of exon 6
TCTGCACTTCCTTGCGTCAAACAATGATTGTGGACTTAGAGACTTTGACATGGAAAAGTTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAATgtaagcctgcagtgc--ttgttgaatt-ttcaattttctatctaaatctagctgctgaagtc-----aatgctcatgttttgtcaaagagcatgtcttaaataaggaca--gaaacacattactgcatcctgtgttggcccctgttttaattttctgcag---------------------------------
  |||||||||| || |||||||||||||||||| || ||||||||||||||||||| |||| ||| |||||  | |||| |||| ||||| |||| |||||||||||  | | |  |  |  || | || |  | | |||||   | ||  |  || |  |     | | || || | ||  | |    || |||   | | |   |   |  | | |||  ||||| |  ||  |          |||| || |   |                                 
GGTGCACTTCCTGGCTTCAAACAATGATTGTGGAGTTCGAGACTTTGACATGGAAAAATTTCAAATTTGCAATAATTTCCGTTTTCCTTGGGCTGTTAATgtaagcctttacttcattcatcaaactgtttatatctatatcttgttttatttattggatactcccaagtcctaatctattcgccacattcaagtcactactgaatgctttgctaaagattcttgcattccatgaggaaagaaagcctaatgttttattgatttaatcttgccccttgttttataccatgcag

upper sequence: GRMZM2G113726_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA17G00740.3 (Glycine max), 5'ss of exon 8
TCTGCACTTCCTTGCGTCAAACAATGATTGTGGACTTAGAGACTTTGACATGGAAAAGTTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAATgtaagcctgcagtgcttgttgaattttcaattttctatctaaatctagctgctgaagtcaatgctcatgttttgtcaaagagcatgtcttaaataaggacagaaacacattactgcatcctgtgttggcccctgttttaattttctgcag
| | || ||| | || ||||| ||||| |||||| |||||||||||||||||||||  ||||   | | ||| || |||   ||  | ||||| || ||||| ||     | |  || |  | || | | |||| ||| |      |  |  |  | |   |    ||    |||    ||     | || | ||   | || |    |                                         
TGTTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGAGACTTTGACATGGAAAGATTTCAGCTTTCCAAGCATTTCTCCTTCTCCTGGCCCGTAAATgtgag----taatatttat--atttataatttttttatttgctgtaaattttttgattttgtaaaaat-ccctgt--gggatttgttttttattatttaaagtagtgta-----------------------------------------

upper sequence: GRMZM2G113726_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA07G40060.1 (Glycine max), 5'ss of exon 8
TCTGCACTTCCTTGCGTCAAACAATGATTGTGGACTTAGAGACTTTGACATGGAAAAGTTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAATgtaagcctgcagtgcttgttgaattttcaattttctatctaaatctagctgctgaagtcaatgctcatgttttgtcaaagagca-tgtcttaaataaggacagaaacacattactgcatcctgtgttggcccctgttttaattttctgcag
| | || ||| | || ||||| ||||| |||||| |||||||||||||||||||||  ||||   | | ||| || |||   ||  | ||||| || ||||||||     | |  || |   ||||  | |||| |||   | |  |  |  || | | |  |||     | |  |    | || | | |||| ||   |  |                                                
TGTTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGAGACTTTGACATGGAAAGATTTCAGCTTTCCAAGCATTTCTCCTTCTCATGGCCCGTAAATgtaag----taatatttat---atttatatttttgtatt--atttaaagtagtgta-ttatggctatcaatctaccttgaatcagtttattaattattaatggtgggggg-----------------------------------------

upper sequence: GRMZM2G113726_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT3G13340.1 (Arabidopsis thaliana), 5'ss of exon 8
TCTGCACTTCCTTGCGTCAAACAATGATTGTGGACTTAGAGACTTTGACATGGAAAAGTTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAATgtaag--cctgcagtgcttgttgaatt---ttcaattttctat-----ctaaatctagct---gctgaagtcaatgctcatgt-------tttgtcaaagagcatgtcttaaataag-gacagaaacacat---tactgcatcct---------gtgttggcccctgtttt-aattttctgcag---
 || || ||   ||||||||| ||||| |||||| ||||||||||||||||||| |  |  |   |    || || |||| |||| ||||||| ||||||||||   |||    || || |||  ||   ||  || |  ||      |  ||  ||||    | |  ||| |  |||  | |       ||| |     ||  |  || |   ||| || | |   ||||   |  || ||| |          || |   | ||||||| |||||  ||      
ACTTCATTTTACTGCGTCAAATAATGACTGTGGAGTTAGAGACTTTGACATGGAGAGATACCAGCTTGTTAAGCATTTCCGTTTTCCTTGGCCAGTGAATgtaaagtccttatttgtttcttggtttgcttttgatctcttacacttgcggaaaatagcatgagttacagttag-gcttttataaccccatttcttcttcagtgtacctaatccaagtgataaaggtacatgtgttttgaatcatttaacaaaaatggtattctctgttttcaatttgttggtacag

upper sequence: GRMZM2G113726_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv19s0015g01750.t01 (Vitis vinifera), 5'ss of exon 7
TCTGCACTTCCTTGCGTCAAACAATGATTGTGGACTTAGAGACTTTGACATGGAAAAGTTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAATgtaagcctgcagtgcttgttgaattttcaattttctatctaaatctagctgctgaagtcaatgctcatgttttgtcaaagagcatgtcttaaataaggacagaaacacattactgcatcctgtgttggcccctgttttaattttctgcag
  | |||||| |||| ||||  ||||| |||||| ||||||||||||| |||||| | |||| | | |  || ||||| |||||| ||||||| |||||||||||  ||||    |    ||||||||| || | ||  |  |  |||   ||   |  | |  |||  ||| | |  | |   | | |   |||||   ||                                                
AGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTTTGATATGGAAGATTTTCAACTTTCTAAGCACTTTCATTTTCCTTGGCCAGTGAATgtaagt-tgcatatatca--gaattttcatttgtttagatctaattagaaactt--gctacttttcagatttagacctaaaaattctttgctataagtttagtgg---------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56461997|gb|CK986295.1|CK986295
EST:     TGGAAAAATTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAAT                         CATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGT
genomic: TGGAAAAGTTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAATgtaagcctgc ... ttttctgcagCATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGT
EST: gi|47961405|gb|CN844114.1|CN844114
EST:     TGGAAAAATTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAAT                         CATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGT
genomic: TGGAAAAGTTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAATgtaagcctgc ... ttttctgcagCATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGT
EST: gi|44681734|gb|CK786782.1|CK786782
EST:     TGGAAAAATTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAAT                         CATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGT
genomic: TGGAAAAGTTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAATgtaagcctgc ... ttttctgcagCATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGT
EST: gi|44682058|gb|CK787106.1|CK787106
EST:     TGGAAAAATTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAAT                         CATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGT
genomic: TGGAAAAGTTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAATgtaagcctgc ... ttttctgcagCATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGT
EST: gi|47962732|gb|CN845441.1|CN845441
EST:     TGGAAAAATTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAAT                         CATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGT
genomic: TGGAAAAGTTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAATgtaagcctgc ... ttttctgcagCATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGT