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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAGgtataataagtatataaacaccagtcgcttttccttgctaccagggatgcatttcagtgccttgttccacattcctaacatggcagagagagctcccaaa...

Basic information

species Zea mays
transcript GRMZM2G113640_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113640_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os06g06730.1 (Oryza sativa), 5'ss of exon 8
CATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAGgtataataagtatataaacaccagtcgcttttc-cttgctaccagggatgcatttcagtgccttgttccacattcctaacatggcagagagagctcccaaa-----
|| |||||||||| |||||||||   || ||||||||| ||||| ||||||||||| ||||||     | || ||| |  | || ||||| ||  ||  ||    | ||  |   |       ||||   || |  |   ||||  ||   ||     |||     
CACATCAAGAAGGTAGCCTTGCGCAACTGCAATGCCATAAGTGCCGAGGTTCTATGTGAGgta-----actaaatagatgctaggcgcttatcattttgtattgtgcatctaccccctaaaaatgttgttcagtatttcaatgg-ggaagtagtaaataaattatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91874160|gb|EB404117.1|EB404117
EST:     AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAG                         CTGCGTTACAATCTACCGCGGACGTACAAGTTGCACAAGAAAAAAGAGATC
genomic: AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAGgtataataag ... ttttttgcagCTGCGTTACAATCTACCGCGGACGTACAAGTTGCACAAGAAAAAAGAGATC
EST: gi|32928356|gb|CF033168.1|CF033168
EST:     AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAG                         CTGCGTTACAATCTACCGCGGACGT
genomic: AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAGgtataataag ... ttttttgcagCTGCGTTACAATCTACCGCGGACGT
EST: gi|213171204|gb|FM188301.1|FM188301
EST:     AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAG                         CTGCGTTACAATCTACCGCGGACGTACAAGTNGCACAAGAAAAAAGAGATT
genomic: AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAGgtataataag ... ttttttgcagCTGCGTTACAATCTACCGCGGACGTACAAGTTGCACAAGAAAAAAGAGATC
EST: gi|211470300|gb|FL449608.1|FL449608
EST:     AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAG                         CTGCGTTACAATCTACCGCGGACGTACAAGTTGCACAAGAAAAAAGAGATC
genomic: AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAGgtataataag ... ttttttgcagCTGCGTTACAATCTACCGCGGACGTACAAGTTGCACAAGAAAAAAGAGATC
EST: gi|6227108|gb|AW155812.1|AW155812
EST:     AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAG                         CTGCGTTACAATCTACCGCGGACGTACAAGTTGCACAAGAAAAAAGAGATT
genomic: AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAGgtataataag ... ttttttgcagCTGCGTTACAATCTACCGCGGACGTACAAGTTGCACAAGAAAAAAGAGATC