1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACTTGCAGTGGCACAAAACCACATCATGGAAGCTGAATATGATGATTATTCTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaactatgaaacatatgtatttatagtattgccacttaaaacaacagggttttcttatttatatgtaacatccaatttgctttttttatgttcag
species | Zea mays |
transcript | GRMZM2G113619_T03 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|37399815|gb|CF637245.1|CF637245
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: CTGCCACAAATGCGAGCACTGCTGCATTTTGCCGCTGAGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|6827480|gb|AW331123.1|AW331123
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: CTGCC-CAAATGCGAGC-CTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|60338944|gb|DN205917.1|DN205917
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|86471507|gb|DY237877.1|DY237877
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|93283252|gb|EB675516.1|EB675516
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|71311804|gb|DR792363.1|DR792363
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|91877838|gb|EB407795.1|EB407795
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|60337669|gb|DN204642.1|DN204642
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: CCACAAATGCGAGCACTGATGCCTTCTGCCGTTTTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
genomic: CCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTGCAGTGGCACAAAACCACATCATGGAAGCTGAATATGATGATTATTCTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaactatgaaacatatgtatttatagtattgccacttaaaacaacagggttttcttatttatatgtaacatccaatttgctttttttatgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT